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BaseInfo

ncRNA ID gma-miR4415a-3p
Species Glycine max
Class miRNA
Genome position chr18:60474195-60474370 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 150 - UUGAUUCUCAUCACAACAUGG - 170
Stem-loop(if miRNA) UG    C G  A                      AGCAGU    CCAAGAAAAAAAAAUCCCAUUAUAAACAUUUUUUCCCCUCAAUC
  GCUG A CA GUUGUGAUGAGAAUCAAUGGCA      GACA                                            U
  |||| | || ||||||||||||||||||||||      ||||                                            U
  UGAC U GU CAACACUACUCUUAGUUACCGU      CCUA                                            C
--    C G  A                      -CAACA    AAUAUAGGAAGUUGUGGUCAAUCGGAUUACUAUAUGAUACUCUU
Stem-loop sequence UGGCUGCAGCAAGUUGUGAUGAGAAUCAAUGGCAAGCAGUGACACCAAGAAAAAAAAAUCCCAUUAUAAACAUUUUUUCCCCUCAAUCUUCUUCUCAUAGUAUAUCAUUAGGCUAACUGGUGUUGAAGGAUAUAAAUCCACAACUGCCAUUGAUUCUCAUCACAACAUGGUCCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543089.3
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *||*|||||||||=|||||||
targets:267   ACACGUUGUGAUGGGAAUCAA   287

2.5 PREDICTED: Glycine max L-ascorbate oxidase (LOC100808812), mRNA L-ascorbate oxidase(LOC100808812) coding protein psRNATarget
XM_003555610.3
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *||*|||||||||=|||||||
targets:278   ACACGUUGUGAUGGGAAUCAA   298

2.5 PREDICTED: Glycine max L-ascorbate oxidase-like (LOC100776011), mRNA L-ascorbate oxidase-like(LOC100776011) coding protein psRNATarget
XM_006601137.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:1878   GUAUGUUUUGAUGAGAAGCAA   1898

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100785728), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100785728) coding protein psRNATarget
XM_006601138.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:1911   GUAUGUUUUGAUGAGAAGCAA   1931

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100785728), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100785728) coding protein psRNATarget
XM_006601323.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:1944   GUAUGUUUUGAUGAGAAGCAA   1964

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100795787), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100795787) coding protein psRNATarget
XM_006586662.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2084   GUAUGUUUUGAUGAGAAGCAA   2104

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget
XM_014761806.1
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2019   GUAUGUUUUGAUGAGAAGCAA   2039

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget
XM_014761807.1
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2084   GUAUGUUUUGAUGAGAAGCAA   2104

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X5, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget
XM_006586663.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2085   GUAUGUUUUGAUGAGAAGCAA   2105

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X6, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget
XM_006586660.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2085   GUAUGUUUUGAUGAGAAGCAA   2105

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget
XM_006586661.2
ncRNA:21   GGUACAACACUACUCUUAGUU   1
  *=|||||*|||||||||*|||
targets:2118   GUAUGUUUUGAUGAGAAGCAA   2138

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g13600-like (LOC100789457), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At2g13600-like(LOC100789457) coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
2 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
3 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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