Search result

BaseInfo

ncRNA ID	gma-miR9744
Species	Glycine max
Class	miRNA
Genome position	chr18:57495707-57495940 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - AAUGGAUAUGAGCUGCAUACA - 26
Stem-loop(if miRNA)	-      A               U   GGACA        G   G      UG   UU   UUCU  --UA  A     -    U       ---------------AU   UCCCCAUGUAUACAC  GAACUA UGGAUAUGAGCUGCA ACA     GAAUGGCU UGA GGGUGC  GAU  GUU    GC    UG AGCCU CCAU GGCUAAG                 CAU               U  |||||| ||||||||||||||| |||     |||||||| ||| ||||||  |||  |||    ||    || ||||| |||| |||||||                 |||  CUUGAU ACCUAUACUCGACGU UGU     CUUAUUGA ACU CCCACG  CUA  CAA    UG    AC UCGGA GGUA CCGAUUC                 GAG               U U      A               C   AGUCA        G   A      GU   UC   --UU  UCAC  C     A    -       AAUCUUACCCUCUCUUC   AGUCUCUUUCAGACU
Stem-loop sequence	GAACUAAUGGAUAUGAGCUGCAUACAGGACAGAAUGGCUGUGAGGGGUGCUGGAUUUGUUUUCUGCUAUGAAGCCUCCAUUGGCUAAGAUCAUUCCCCAUGUAUACACUUUCAGACUUUCUCUGAGAGCUUCUCUCCCAUUCUAACUUAGCCAUGGAAGGCUCCACACUGUUUAACCUAUCUGGCACCCAUCAGAGUUAUUCACUGAUGUCUGCAGCUCAUAUCCAAUAGUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006580010.2	ncRNA:21   AUAGAAGUCUCAACCUACCCA   1   ||||*|||||||||*|||||| targets:1029   UAUCAUCAGAGUUGAAUGGGU   1049 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802419 (LOC100802419), transcript variant X4, mRNA	uncharacterized LOC100802419(LOC100802419)	coding protein	psRNATarget
XM_006580009.2	ncRNA:21   AUAGAAGUCUCAACCUACCCA   1   ||||*|||||||||*|||||| targets:1077   UAUCAUCAGAGUUGAAUGGGU   1097 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802419 (LOC100802419), transcript variant X3, mRNA	uncharacterized LOC100802419(LOC100802419)	coding protein	psRNATarget
XM_006580008.2	ncRNA:21   AUAGAAGUCUCAACCUACCCA   1   ||||*|||||||||*|||||| targets:1077   UAUCAUCAGAGUUGAAUGGGU   1097 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802419 (LOC100802419), transcript variant X2, mRNA	uncharacterized LOC100802419(LOC100802419)	coding protein	psRNATarget
XM_006580007.2	ncRNA:21   AUAGAAGUCUCAACCUACCCA   1   ||||*|||||||||*|||||| targets:1082   UAUCAUCAGAGUUGAAUGGGU   1102 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802419 (LOC100802419), transcript variant X1, mRNA	uncharacterized LOC100802419(LOC100802419)	coding protein	psRNATarget
XM_006599610.2	ncRNA:21   AUAGAAGUCUCAACCUACCCA   1   *=||||=|||||||||||*|| targets:1369   GGUCUUUAGAGUUGGAUGAGU   1389 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102668185 (LOC102668185), transcript variant X1, mRNA	uncharacterized LOC102668185(LOC102668185)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).