ncRNA ID | ath-miR848 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:4479397-4479591 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 52 - UGACAUGGGACUGCCUAAGCUA - 73 |
Stem-loop(if miRNA) |
AAAACUUUCA A - A - UAU -AAA AU --- A - A U AAA A CCA G UUGC AC AGA GAA GAA GU UAACA CAAGCCUU UAGCUU GGCA UCUCAUGUCAAA AAGG AGA GAGGAAC A | |||| || ||| ||| ||| || ||||| |||||||| |||||| |||| |||||||||||| |||| ||| ||||||| G C AACG UG UUU CUU CUU CA AUUGU GUUCGGAA AUCGAA CCGU AGGGUACAGUUU UUCC UCU CUCUUUG G ----AUUUCA C C C A --U CCUA CU ACC - U C C --A A UAU |
Stem-loop sequence | AAAACUUUCAGAUUGCACAAGAGAAUAUGAAAAAGUAUUAACACAAGCCUUAUAGCUUGGCAAUCUCAUGUCAAAUAAGGAAAAGAAGAGGAACCCAAGGUAUGUUUCUCAUCUACCUUCUUUGACAUGGGACUGCCUAAGCUAAAGGCUUGCCAUGUUAUCACAUCCUUCUUUCAUUUCGUCGCAACCACUUUA |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |