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BaseInfo

ncRNA ID ath-miR848
Species Arabidopsis thaliana
Class miRNA
Genome position chr5:4479397-4479591 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 52 - UGACAUGGGACUGCCUAAGCUA - 73
Stem-loop(if miRNA) AAAACUUUCA A    -  A   -   UAU   -AAA  AU     ---        A      -    A            U    AAA   A       CCA
          G UUGC AC AGA GAA   GAA    GU  UAACA   CAAGCCUU UAGCUU GGCA UCUCAUGUCAAA AAGG   AGA GAGGAAC   A
          | |||| || ||| |||   |||    ||  |||||   |||||||| |||||| |||| |||||||||||| ||||   ||| |||||||   G
          C AACG UG UUU CUU   CUU    CA  AUUGU   GUUCGGAA AUCGAA CCGU AGGGUACAGUUU UUCC   UCU CUCUUUG   G
----AUUUCA C    C  C   A   --U   CCUA  CU     ACC        -      U    C            C    --A   A       UAU
Stem-loop sequence AAAACUUUCAGAUUGCACAAGAGAAUAUGAAAAAGUAUUAACACAAGCCUUAUAGCUUGGCAAUCUCAUGUCAAAUAAGGAAAAGAAGAGGAACCCAAGGUAUGUUUCUCAUCUACCUUCUUUGACAUGGGACUGCCUAAGCUAAAGGCUUGCCAUGUUAUCACAUCCUUCUUUCAUUUCGUCGCAACCACUUUA

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
2 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).