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BaseInfo

ncRNA ID	gma-miR1520l
Species	Glycine max
Class	miRNA
Genome position	chr18:55686672-55686781 [+]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	80 - AAUCAGAACAUGACACGUGAUAGU - 103
Stem-loop(if miRNA)	A         ---      GAAAACAACA   C GAUGAUGAUUGUCACGUGUCAU UUCUGAUUG   GUCAAU          AUG A |||||||||||||||||||||| |||||||||   ||||||          ||| U UUACUACUGAUAGUGCACAGUA AAGACUAAC   CAGUUG          UAC U                       C         UUA      AGGUAUAUUC   U
Stem-loop sequence	GAUGAUGAUUGUCACGUGUCAUAUUCUGAUUGGUCAAUGAAAACAACAAUGCAUUUCAUCUUAUAUGGAGUUGACAUUCAAUCAGAACAUGACACGUGAUAGUCAUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410444.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	1.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242574.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	1.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
JB170905.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39 Target Full Sequence	1.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	1.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	1.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||||||||*||| targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100 Target Full Sequence	1.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003518407.3	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||=||||||||||*||||||||| targets:1635   ACUGUCACGUGUCACGUUCUGAUU   1658 Target Full Sequence	1.5	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget
HI410475.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||*||||||||||||||=||||* targets:106   ACUUUCACGUGUCAUGUUUUGAUG   129 Target Full Sequence	2.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
JB170936.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||*||||||||||||||=||||* targets:106   ACUUUCACGUGUCAUGUUUUGAUG   129 Target Full Sequence	2.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||*||||||||||||||=||||* targets:106   ACUUUCACGUGUCAUGUUUUGAUG   129 Target Full Sequence	2.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||*||||||||||||||=||||* targets:1515   ACUUUCACGUGUCAUGUUUUGAUG   1538 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:24   UGAUAGUGCACAGUACAAGACUAA   1   |||*||||||||||||||=||||* targets:1527   ACUUUCACGUGUCAUGUUUUGAUG   1550 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).