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BaseInfo

ncRNA ID	gma-miR5770a
Species	Glycine max
Class	miRNA
Genome position	chr18:50625466-50625712 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	217 - UUAGGACUAUGGUUUGGACGA - 237
Stem-loop(if miRNA)	-  -A                   U          CA U   C   A     -    -   -  UG  U  -- GUGCACCGCAAAAGGGGAAUAAGAUUUUCUACCUAUGGCGAGGUAUAUGUCUG  GG  UAUUUCUUUAGGACUAUGG UUGGACGAGU  C ACU AGC GAGAA CAUG CUA AU  AU UG  U                                                     U  ||  ||||||||||||||||||| ||||||||||  | ||| ||| ||||| |||| ||| ||  || ||  |                                                     U  CC  GUAAGGAAAUUUUGAUACC AACCUGUUCA  G UGA UUG GAAGA ACAA AGU CG  AG AC  G                                                     G C  AA                   U          CC U   C   A     C    U   U  --  -  GU CUAAAACCUGAUUUUCGACUUUUGUUAUUUUCAAUACUCUUGUAUUGGUUUUA
Stem-loop sequence	GGAUAUUUCUUUAGGACUAUGGUUUGGACGAGUCACUACUCAGCAGAGAACAUGCUAAUUGAUUUGUGUGCACCGCAAAAGGGGAAUAAGAUUUUCUACCUAUGGCGAGGUAUAUGUCUGUUGAUUUUGGUUAUGUUCUCAUAACUUUUAUUGUUUUCAGCUUUUAGUCCAAAAUCGUGCAGAGCUUGAUAACACAGAAGAGUUCAGUUGCCACUUGUCCAAUCCAUAGUUUUAAAGGAAUGAACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003516370.3	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |||||*||||||||||||||| targets:219   UCGUCAAAACCAUAGUCCUAA   239 Target Full Sequence	1.0	PREDICTED: Glycine max primary amine oxidase-like (LOC100819571), mRNA	primary amine oxidase-like(LOC100819571)	coding protein	psRNATarget
AJ583529.1	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |=||||||||||||||||*|| targets:142   UUGUCCAAACCAUAGUCCAAA   162 Target Full Sequence	1.5	Glycine max mRNA for diamine oxidase (dao gene)	NA	coding protein	psRNATarget
NM_001250282.2	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |=||||||||||||||||*|| targets:162   UUGUCCAAACCAUAGUCCAAA   182 Target Full Sequence	1.5	Glycine max copper amino oxidase (DAO), mRNA	copper amino oxidase(DAO)	coding protein	psRNATarget
AK244480.1	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |*||=|||||=|||||||||| targets:923   UAGUUCAAACUAUAGUCCUAA   943 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-04-K07	NA	coding protein	psRNATarget
XM_014773401.1	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |*||=|||||=|||||||||| targets:1462   UAGUUCAAACUAUAGUCCUAA   1482 Target Full Sequence	2.5	PREDICTED: Glycine max protein DETOXIFICATION 21 (LOC100788960), transcript variant X2, mRNA	protein DETOXIFICATION 21(LOC100788960)	coding protein	psRNATarget
XM_003520850.3	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |*||=|||||=|||||||||| targets:1462   UAGUUCAAACUAUAGUCCUAA   1482 Target Full Sequence	2.5	PREDICTED: Glycine max protein DETOXIFICATION 21 (LOC100788960), transcript variant X1, mRNA	protein DETOXIFICATION 21(LOC100788960)	coding protein	psRNATarget
XM_006605988.2	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   |*||||=|||||||||||*|| targets:159   UGGUCCGAACCAUAGUCCAAA   179 Target Full Sequence	2.5	PREDICTED: Glycine max primary amine oxidase-like (LOC100799555), mRNA	primary amine oxidase-like(LOC100799555)	coding protein	psRNATarget
XM_003528326.3	ncRNA:21   AGCAGGUUUGGUAUCAGGAUU   1   *=*||=|*||||||||||||| targets:2   CUUUCUAUACCAUAGUCCUAA   22 Target Full Sequence	3.0	PREDICTED: Glycine max auxin-induced protein AUX22 (LOC100791342), mRNA	auxin-induced protein AUX22(LOC100791342)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).