Search result

BaseInfo

ncRNA ID	gma-miR2111b
Species	Glycine max
Class	miRNA
Genome position	chr18:49934393-49934476 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	54 - UAAUCUGCAUCCUGAGGUUUA - 74
Stem-loop(if miRNA)	U     CA              UG   U     AA A   U  AGGAU  GGUAAUCUGCAUCC  AGG UUAGA  C AUA G  |||||  ||||||||||||||  ||| |||||  | |||  UCCUG  CCAUUAGAUGUAGG  UCC AAUCU  G UAU U U     CA              GU   U     GG C   U
Stem-loop sequence	UAGGAUCAGGUAAUCUGCAUCCUGAGGUUUAGAAACAAUAUGUUUAUCGGGUCUAAUCCUUGGGAUGUAGAUUACCACGUCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003525700.3	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   *=|=||||||||||||||||| targets:771   AGAGCCUCAGGAUGCAGAUUA   791 Target Full Sequence	1.0	PREDICTED: Glycine max F-box/kelch-repeat protein At3g27150-like (LOC100813827), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC100813827)	coding protein	psRNATarget
XM_003547601.3	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |**|||||||||||||||||| targets:835   UUUACCUCAGGAUGCAGAUUA   855 Target Full Sequence	1.0	PREDICTED: Glycine max F-box/kelch-repeat protein At3g27150 (LOC100777338), mRNA	F-box/kelch-repeat protein At3g27150(LOC100777338)	coding protein	psRNATarget
XM_003553203.3	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |**|||||||||||||||||| targets:1048   UUUACCUCAGGAUGCAGAUUA   1068 Target Full Sequence	1.0	PREDICTED: Glycine max F-box/kelch-repeat protein At3g27150-like (LOC100783477), mRNA	F-box/kelch-repeat protein At3g27150-like(LOC100783477)	coding protein	psRNATarget
XM_014767492.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |**|||||||||||||*|||| targets:2750   UUUACCUCAGGAUGCACAUUA   2770 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102666258 (LOC102666258), transcript variant X2, mRNA	uncharacterized LOC102666258(LOC102666258)	coding protein	psRNATarget
XM_014767491.1	ncRNA:21   AUUUGGAGUCCUACGUCUAAU   1   |**|||||||||||||*|||| targets:2776   UUUACCUCAGGAUGCACAUUA   2796 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102666258 (LOC102666258), transcript variant X1, mRNA	uncharacterized LOC102666258(LOC102666258)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).