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BaseInfo

ncRNA ID gma-miR4387d
Species Glycine max
Class miRNA
Genome position chr18:48035663-48035768 [-]
Reference genome v1.0
Source miRBase
Length 24
Mature sequence(if miRNA) 10 - AUGUCACUGAUUAGGCAUGAUGAU - 33
Stem-loop(if miRNA)                      U    U      C   U        C  CAC
GAGUGUCACGUUAUCAUGUCU GUCA UGACAU UCA UGUCAUGU AU   C
||||||||||||||||||||| |||| |||||| ||| |||||||| ||
CUCACAGUGUAGUAGUACGGA UAGU ACUGUA AGU ACAGUGCA UA   U
                     U    C      U   U        A  ACU
Stem-loop sequence GAGUGUCACGUUAUCAUGUCUUGUCAUUGACAUCUCAUUGUCAUGUCAUCACCUUCAAUAACGUGACAUUGAUAUGUCACUGAUUAGGCAUGAUGAUGUGACACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003554657.3
ncRNA:24   UAGUAGUACGGAUUAGUCACUGUA   1
  ||*||*||*||||||||||||||*
targets:111   AUAAUAAUUCCUAAUCAGUGACAA   134

3.0 PREDICTED: Glycine max auxin-responsive protein IAA16-like (LOC100803986), mRNA auxin-responsive protein IAA16-like(LOC100803986) coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).