| ncRNA ID | ath-miR5629 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:3802714-3803062 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 220 - UUAGGGUAGUUAACGGAAGUUA - 241 |
| Stem-loop(if miRNA) |
UUAUUUUUAAUUUGGA G A CUAUC GUUGGUAUAAUCGUACCUCCGAGUUAACUUCCGUCAACUACCCUAACGGAAACAUAUUCGUAUAAUCAAGAAAAGCGAUUGUACUUAUUUACAUAAU CGUUUAAUACCUCUA UAUUUAAUUUGGAAGAAAAAUACCUUA UUAAUUUUGGUUAC AAAAA U ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| A GCAAAUUAUGGAGAU AUAAAUUAAACCUUCUUUUUGUGGAAU AAUUAAAACCAAUG UUUUG A ---------------- G C AAUAA AAAGCAAAAAAUUUUUCAACCAUAUUAGAAUGGAAGCUCAAUUGAAGGCAAUUGAUGGGAUUGCCUUAACAAUUGACACCAAUUUUGAAUUGAGUAC |
| Stem-loop sequence | UUAUUUUUAAUUUGGACGUUUAAUACCUCUAGUAUUUAAUUUGGAAGAAAAAUACCUUAAUUAAUUUUGGUUACCUAUCAAAAAGUUGGUAUAAUCGUACCUCCGAGUUAACUUCCGUCAACUACCCUAACGGAAACAUAUUCGUAUAAUCAAGAAAAGCGAUUGUACUUAUUUACAUAAUUAACAUGAGUUAAGUUUUAACCACAGUUAACAAUUCCGUUAGGGUAGUUAACGGAAGUUAACUCGAAGGUAAGAUUAUACCAACUUUUUAAAAAACGAAAGUUUUAAUAAGUAACCAAAAUUAACUAAGGUGUUUUUCUUCCAAAUUAAAUAGUAGAGGUAUUAAACG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001343214.1 |
|
1.5 | Arabidopsis thaliana N-MYC downregulated-like 2 (NDL2), mRNA | N-MYC downregulated-like 2(NDL2) | coding protein | psRNATarget | |||||||||
| NM_121217.3 |
|
1.5 | Arabidopsis thaliana N-MYC downregulated-like 2 (NDL2), mRNA | N-MYC downregulated-like 2(NDL2) | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |