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BaseInfo

ncRNA ID	gma-miR5769
Species	Glycine max
Class	miRNA
Genome position	chr18:7364612-7364781 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	140 - UGAGGGAAAUGAAGACGACGA - 160
Stem-loop(if miRNA)	UUUAU  C        G A     GA   G -      UGCAUAUA  GUAUUGUACAGGAUUAAAAAAAUAAAUUUAAUGGCAU      CU CUUCGUCG C UCAUU  CUU A CAUAUU        GA                                     U      || |||||||| | |||||  ||| | ||||||        ||                                     U      GA GAAGCAGC G AGUAA  GGA U GUGUAA        GG                                     U AAACU  U        A A     AG   G A      --UAUAAG  AAGUACCAGAAUUCAACUUAGUACGAAAACCGGCAAC
Stem-loop sequence	UUUAUCUCCUUCGUCGGCAUCAUUGACUUGACAUAUUUGCAUAUAGAGUAUUGUACAGGAUUAAAAAAAUAAAUUUAAUGGCAUUUUCAACGGCCAAAAGCAUGAUUCAACUUAAGACCAUGAAGGGAAUAUAAUGUGAUGAGGGAAAUGAAGACGACGAAGUAGUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003522721.3	ncRNA:21   AGCAGCAGAAGUAAAGGGAGU   1   **|||||=||||||||||||| targets:232   AAGUCGUUUUCAUUUCCCUCA   252 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100799725 (LOC100799725), mRNA	uncharacterized LOC100799725(LOC100799725)	coding protein	psRNATarget
AK245277.1	ncRNA:21   AGCAGCAGAAGUAAAGGGAGU   1   **|||||=||||||||||||| targets:137   AAGUCGUUUUCAUUUCCCUCA   157 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-25-N15	NA	coding protein	psRNATarget
XM_006590809.2	ncRNA:21   AGCAGCAGAAGUAAAGGGAGU   1   *=||=*||||||||||||||| targets:157   CUGUUCUCUUCAUUUCCCUCA   177 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102662025 (LOC102662025), mRNA	uncharacterized LOC102662025(LOC102662025)	coding protein	psRNATarget
XM_006573290.2	ncRNA:21   AGCAGCAGAAGUAAAGGGAGU   1   |=|||*|||||||||*||||| targets:601   UUGUCUUCUUCAUUUACCUCA   621 Target Full Sequence	2.5	PREDICTED: Glycine max receptor-like protein 12 (LOC100791529), mRNA	receptor-like protein 12(LOC100791529)	coding protein	psRNATarget
XM_006573291.2	ncRNA:21   AGCAGCAGAAGUAAAGGGAGU   1   |=|||*|||||||||*||||| targets:563   UUGUCUUCUUCAUUUACCUCA   583 Target Full Sequence	2.5	PREDICTED: Glycine max receptor-like protein 12 (LOC102664945), mRNA	receptor-like protein 12(LOC102664945)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).