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BaseInfo

ncRNA ID	gma-miR172c
Species	Glycine max
Class	miRNA
Genome position	chr18:2968986-2969138 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	114 - GGAAUCUUGAUGAUGCUGCAG - 134
Stem-loop(if miRNA)	AAAUC     CUGU    C G  G                A  -   UUU      AU     -UG    AG UG  U      AGUCA    UUGC G UG AGCAUCAUCAAGAUUC CA AGC   AGGGGC  UAAUU   UUUG  G  GU C      |||||    |||| | || |||||||||||||||| || |||   ||||||  |||||   ||||  |  || C      UCAGU    AACG C AC UCGUAGUAGUUCUAAG GU UCG   UUCCCG  AUUAA   AAAC  C  UA U -AUAA     AAAU    A G  G                G  A   -UU      --     CCA    CU GU  U
Stem-loop sequence	AAAUCAGUCACUGUUUGCCGGUGGAGCAUCAUCAAGAUUCACAAGCUUUAGGGGCAUUAAUUUGUUUGAGGUGGUUCCUUAUUGCUCCAAAACCAAUUAGCCCUUUUGCUAUGGGAAUCUUGAUGAUGCUGCAGCAGCAAUAAAUGACUAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003520593.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1545   CUGCAGCAUCAUCAGGAUUCC   1565 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA	floral homeotic protein APETALA 2-like(LOC100808212)	coding protein	psRNATarget
XM_006573580.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1814   CUGCAGCAUCAUCAGGAUUCC   1834 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014763839.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1820   CUGCAGCAUCAUCAGGAUUCC   1840 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA	floral homeotic protein APETALA 2-like(LOC100786333)	coding protein	psRNATarget
XM_003517264.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1822   CUGCAGCAUCAUCAGGAUUCC   1842 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006573579.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1829   CUGCAGCAUCAUCAGGAUUCC   1849 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014772192.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:2031   CUGCAGCAUCAUCAGGAUUCC   2051 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003554309.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:2050   CUGCAGCAUCAUCAGGAUUCC   2070 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003550003.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1969   CUGCAGCAUCAUCAAGUUUCC   1989 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006600875.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1972   CUGCAGCAUCAUCAAGUUUCC   1992 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006579822.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1971   CUGCAGCAUCAUCAAGUUUCC   1991 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1975   CUGCAGCAUCAUCAAGUUUCC   1995 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1990   CUGCAGCAUCAUCAAGUUUCC   2010 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775566.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||||*|||| targets:1994   CUGCAGCAUCAUCAAGUUUCC   2014 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
JA894828.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *||=||||||||||||||||* targets:21   AUGUAGCAUCAUCAAGAUUCA   41 Target Full Sequence	2.0	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
KT031086.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1310   CUGCAGCAUCAUCAGGAUUCU   1330 Target Full Sequence	2.5	Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006597244.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1749   CUGCAGCAUCAUCAGGAUUCU   1769 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003546994.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1798   CUGCAGCAUCAUCAGGAUUCU   1818 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003540705.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1764   CUGCAGCAUCAUCAGGAUUCU   1784 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592181.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1768   CUGCAGCAUCAUCAGGAUUCU   1788 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592180.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1810   CUGCAGCAUCAUCAGGAUUCU   1830 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592179.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1813   CUGCAGCAUCAUCAGGAUUCU   1833 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006594938.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1855   CUGCAGCAUCAUCAGGAUUCU   1875 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003541960.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1901   CUGCAGCAUCAUCAGGAUUCU   1921 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_006594937.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:2016   CUGCAGCAUCAUCAGGAUUCU   2036 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
KT031071.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1178   AUGCAGCAUCAUCAGGAUUCG   1198 Target Full Sequence	2.5	Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014765905.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1398   AUGCAGCAUCAUCAGGAUUCG   1418 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765903.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1475   AUGCAGCAUCAUCAGGAUUCG   1495 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765900.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1535   AUGCAGCAUCAUCAGGAUUCG   1555 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765901.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1590   AUGCAGCAUCAUCAGGAUUCG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003519962.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1650   AUGCAGCAUCAUCAGGAUUCG   1670 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003535131.3	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *|||||||||||||=|||||* targets:1643   AUGCAGCAUCAUCAGGAUUCG   1663 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100783626)	coding protein	psRNATarget
XM_014776734.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   =||=|*|*||||||||||||| targets:1968   UUGUACCUUCAUCAAGAUUCC   1988 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100807748), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100807748)	coding protein	psRNATarget
XM_014776735.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *||=|*|*||||||||||||| targets:1851   AUGUAUCUUCAUCAAGAUUCC   1871 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100802962), transcript variant X2, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100802962)	coding protein	psRNATarget
XM_006582156.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   *||=|*|*||||||||||||| targets:1945   AUGUAUCUUCAUCAAGAUUCC   1965 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100802962), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100802962)	coding protein	psRNATarget

Reference

1	PMID:19084500 "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"; Wang Y, Li P, Cao X, Wang X, Zhang A, Li X; Biochem Biophys Res Commun. 378:799-803(2009).