ncRNA ID | ath-miR156d-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr5:3456632-3456749 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 23 |
Mature sequence(if miRNA) | 12 - GCUCACUCUCUUUUUGUCAUAAC - 34 |
Stem-loop(if miRNA) |
G        AAA     --        -            A      G  AGU       A  AUGGGGGA   GAAGU  UGACAGAA GAGAGUGAGCAC CAAAGG GA   UGUAUAA A  ||||||||   |||||  |||||||| |||||||||||| |||||| ||   ||||||| G  UACUUCCU   CUUCA  ACUGUUUU CUCUCACUCGUG GUUUUC UU   AUAUGUU U -        ---     AU        U            C      G  GGU       U |
Stem-loop sequence | GAUGGGGGAAAAGAAGUUGACAGAAGAGAGUGAGCACACAAAGGGGAAGUUGUAUAAAAGUUUUGUAUAUGGUUGCUUUUGCGUGCUCACUCUCUUUUUGUCAUAACUUCUCCUUCAU |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:12202040
"Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002). |
3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
6 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |