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BaseInfo

ncRNA ID	ath-miR838
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:28500-28706 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	136 - UUUUCUUCUACUUCUUGCACA - 156
Stem-loop(if miRNA)	---UACUUUUCUAAUAUCAC        AC          GUC    G   U             G     C      U    A     ----    AGA      CU                     GAGGACUU  AUGGCCUCAA   ACCU UGG GUUGUGCAAGAAG AGAAG AAAGUC GUCU UGUAU    UAUG   UAGCUA  U                     ||||||||  ||||||||||   |||| ||| ||||||||||||| ||||| |||||| |||| |||||    ||||   ||||||                     CUUCUGAA  UAUCGGAGUU   UGGA GUC CAACACGUUCUUC UCUUC UUUCGG CAGA ACAUG    AUAU   AUCGGU  C AUUAUUUAUUGUAAUAUCUU        CA          -AU    -   -             A     U      C    -     UUGU    AGG      AU
Stem-loop sequence	UACUUUUCUAAUAUCACGAGGACUUACAUGGCCUCAAGUCACCUGUGGUGUUGUGCAAGAAGGAGAAGCAAAGUCUGUCUAUGUAUUAUGAGAUAGCUACUUCUAUGGCUAGGAUAUAUGUUGUACAAGACCGGCUUUUCUUCUACUUCUUGCACAACCUGAGGUUAUUGAGGCUAUACAAGUCUUCUUCUAUAAUGUUAUUUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001342863.1	ncRNA:20   CACGUUCUUCAUCUUCUUUU   1   *||||||||||||||*|||| targets:1   CUGCAAGAAGUAGAAAAAAA   20 Target Full Sequence	1.5	Arabidopsis thaliana AP2/B3-like transcriptional factor family protein (DPA4), mRNA	AP2/B3-like transcriptional factor family protein(DPA4)	coding protein	psRNATarget
NM_001342864.1	ncRNA:20   CACGUUCUUCAUCUUCUUUU   1   *||||||||||||||*|||| targets:1   CUGCAAGAAGUAGAAAAAAA   20 Target Full Sequence	1.5	Arabidopsis thaliana AP2/B3-like transcriptional factor family protein (DPA4), mRNA	AP2/B3-like transcriptional factor family protein(DPA4)	coding protein	psRNATarget
NM_118670.2	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   ***|||||||||||||||||= targets:287   AUCGCAAGAAGUAGAAGAAAG   307 Target Full Sequence	2.0	Arabidopsis thaliana stress-associated protein 10 (SAP10), mRNA	stress-associated protein 10(SAP10)	coding protein	psRNATarget
BX831697.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |***||||||||||||||||| targets:141   UCAACAAGAAGUAGAAGAAAA   161 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001343638.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |***||||||||||||||||| targets:304   UCAACAAGAAGUAGAAGAAAA   324 Target Full Sequence	2.0	Arabidopsis thaliana Dynein light chain type 1 family protein mRNA	Dynein light chain type 1 family protein(AT5G20110)	coding protein	psRNATarget
NM_122018.3	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |***||||||||||||||||| targets:304   UCAACAAGAAGUAGAAGAAAA   324 Target Full Sequence	2.0	Arabidopsis thaliana Dynein light chain type 1 family protein mRNA	Dynein light chain type 1 family protein(AT5G20110)	coding protein	psRNATarget
BT011208.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |***||||||||||||||||| targets:228   UCAACAAGAAGUAGAAGAAAA   248 Target Full Sequence	2.0	Arabidopsis thaliana At5g20110 gene, complete cds	NA	coding protein	psRNATarget
BT012141.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |***||||||||||||||||| targets:138   UCAACAAGAAGUAGAAGAAAA   158 Target Full Sequence	2.0	Arabidopsis thaliana At5g20110 mRNA, complete cds	NA	coding protein	psRNATarget
NM_101970.4	ncRNA:21   ACACG--UUCUUCAUCUUCUUUU   1   **|||--|||||||||||||||| targets:2176   CUUGCUAAAGAAGUAGAAGAAAA   2198 Target Full Sequence	2.5	Arabidopsis thaliana eukaryotic translation initiation factor 2 (eIF-2) family protein mRNA	eukaryotic translation initiation factor 2 (eIF-2) family protein(AT1G21160)	coding protein	psRNATarget
AK226257.1	ncRNA:21   ACACG--UUCUUCAUCUUCUUUU   1   **|||--|||||||||||||||| targets:1398   CUUGCUAAAGAAGUAGAAGAAAA   1420 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative transcription factor, partial cds, clone: RAFL05-03-L22	NA	coding protein	psRNATarget
AB493471.1	ncRNA:21   ACACG--UUCUUCAUCUUCUUUU   1   **|||--|||||||||||||||| targets:1459   CUUGCUAAAGAAGUAGAAGAAAA   1481 Target Full Sequence	2.5	Arabidopsis thaliana At1g21160 mRNA for hypothetical protein, partial cds, clone: RAAt1g21160	NA	coding protein	psRNATarget
NM_105392.5	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   **|||||||||*||||||||= targets:1071   GUUGCAAGAAGGAGAAGAAAG   1091 Target Full Sequence	2.5	Arabidopsis thaliana little nuclei1 (LINC1), mRNA	little nuclei1(LINC1)	coding protein	psRNATarget
AK230454.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   **|||||||||*||||||||= targets:974   GUUGCAAGAAGGAGAAGAAAG   994 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL26-01-N20	NA	coding protein	psRNATarget
NM_001337148.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |**|=|=|||||||||||||| targets:2071   UUAGUAGGAAGUAGAAGAAAA   2091 Target Full Sequence	3.0	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT2G45720)	coding protein	psRNATarget
NM_130135.4	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |**|=|=|||||||||||||| targets:2142   UUAGUAGGAAGUAGAAGAAAA   2162 Target Full Sequence	3.0	Arabidopsis thaliana ARM repeat superfamily protein mRNA	ARM repeat superfamily protein(AT2G45720)	coding protein	psRNATarget
AK229219.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |**|=|=|||||||||||||| targets:1864   UUAGUAGGAAGUAGAAGAAAA   1884 Target Full Sequence	3.0	Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-50-O08	NA	coding protein	psRNATarget
BX819787.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |**|=|=|||||||||||||| targets:1814   UUAGUAGGAAGUAGAAGAAAA   1834 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS27ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT015356.1	ncRNA:21   ACACGUUCUUCAUCUUCUUUU   1   |**|=|=|||||||||||||| targets:1808   UUAGUAGGAAGUAGAAGAAAA   1828 Target Full Sequence	3.0	Arabidopsis thaliana At2g45720 gene, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).