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BaseInfo

ncRNA ID gma-miR394a-3p
Species Glycine max
Class miRNA
Genome position chr17:41783747-41783903 [+]
Reference genome v1.0
Source miRBase
Length 20
Mature sequence(if miRNA) 122 - AGCUCUGUUGGCUACACUUU - 141
Stem-loop(if miRNA)              A         U              -      U C            -C   CUACUCUCUCUCU
AUCAUGAGGGUUU GCAAAGUGU GCUAACAGAGUUUA UUGGCA U UGUCCACCUCCA  UUC             C
||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||||  |||             U
UAGUACUUCCGAA UGUUUCACA CGGUUGUCUCGAGU AACUGU A ACGGGUGGAGGU  AAG             C
             A         U              C      C U            AU   UACCCAUCUCUCU
Stem-loop sequence AUCAUGAGGGUUUAGCAAAGUGUUGCUAACAGAGUUUAUUGGCAUUCUGUCCACCUCCACUUCCUACUCUCUCUCUCUCUCUCUCUACCCAUGAAUAUGGAGGUGGGCAUACUGUCAACUGAGCUCUGUUGGCUACACUUUGUAAAGCCUUCAUGAU

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).