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BaseInfo

ncRNA ID gma-miR396e
Species Glycine max
Class miRNA
Genome position chr17:35366545-35366658 [-]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 87 - UUCCACAGCUUUCUUGAACUGU - 108
Stem-loop(if miRNA)      C          U       C     ----  UGAGGCUUCUCUCCAAUGAAGG
GUGAU UUCCACAGCU UCUUGAA UGUGU    UG                      U
||||| |||||||||| ||||||| |||||    ||
CACUA AAGGUGUCGA AGAACUU ACACG    UC                      U
     A          U       A     AGUA  UUAAAGAAAACGUAUCCCAUAU
Stem-loop sequence GUGAUCUUCCACAGCUUUCUUGAACUGUGUUGUGAGGCUUCUCUCCAAUGAAGGUUUAUACCCUAUGCAAAAGAAAUUCUAUGAGCACAAUUCAAGAUAGCUGUGGAAAAUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242718.1
ncRNA:22   UGUCAAGUUCUUUCGACACCUU   1
  |||*|||||||*||||||||||
targets:91   ACAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2985353 NA coding protein psRNATarget
JB171049.1
ncRNA:22   UGUCAAGUUCUUUCGACACCUU   1
  |||*|||||||*||||||||||
targets:91   ACAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2559767 NA coding protein psRNATarget
HI410588.1
ncRNA:22   UGUCAAGUUCUUUCGACACCUU   1
  |||*|||||||*||||||||||
targets:91   ACAAUUCAAGAUAGCUGUGGAA   112

2.5 Sequence 8713 from Patent EP2074227 NA coding protein psRNATarget
XM_014763023.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:631   ACCGUUCAAGAAAGCCUGUGGAA   653

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814300), transcript variant X2, mRNA growth-regulating factor 3-like(LOC100814300) coding protein psRNATarget
XM_003536999.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:643   ACCGUUCAAGAAAGCCUGUGGAA   665

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814300), transcript variant X1, mRNA growth-regulating factor 3-like(LOC100814300) coding protein psRNATarget
XM_003537618.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:440   ACCGUUCAAGAAAGCCUGUGGAA   462

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100817313), mRNA growth-regulating factor 4-like(LOC100817313) coding protein psRNATarget
XM_003517510.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:559   ACCGUUCAAGAAAGCCUGUGGAA   581

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100797906), mRNA growth-regulating factor 4-like(LOC100797906) coding protein psRNATarget
XM_003539994.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:547   ACCGUUCAAGAAAGCCUGUGGAA   569

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100787226), mRNA growth-regulating factor 4-like(LOC100787226) coding protein psRNATarget
XM_003538953.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:613   ACCGUUCAAGAAAGCCUGUGGAA   635

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100787567), mRNA growth-regulating factor 5-like(LOC100787567) coding protein psRNATarget
XM_006598769.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:757   ACCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X2, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_006598768.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:757   ACCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X1, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_003516444.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:548   ACCGUUCAAGAAAGCCUGUGGAA   570

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100809947), mRNA growth-regulating factor 3-like(LOC100809947) coding protein psRNATarget
XM_003533411.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:538   ACCGUUCAAGAAAGCCUGUGGAA   560

3.0 PREDICTED: Glycine max growth-regulating factor 4-like (LOC100777524), mRNA growth-regulating factor 4-like(LOC100777524) coding protein psRNATarget
XM_003521400.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:860   ACCGUUCAAGAAAGCCUGUGGAA   882

3.0 PREDICTED: Glycine max growth-regulating factor 3 (LOC100816436), transcript variant X2, mRNA growth-regulating factor 3(LOC100816436) coding protein psRNATarget
XM_014773900.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:910   ACCGUUCAAGAAAGCCUGUGGAA   932

3.0 PREDICTED: Glycine max growth-regulating factor 3 (LOC100816436), transcript variant X1, mRNA growth-regulating factor 3(LOC100816436) coding protein psRNATarget
XM_003551083.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:633   ACCGUUCAAGAAAGCCUGUGGAA   655

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807835), mRNA growth-regulating factor 1-like(LOC100807835) coding protein psRNATarget
XM_003547671.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:757   ACCGUUCAAGAAAGCCUGUGGAA   779

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100814760), transcript variant X3, mRNA growth-regulating factor 5-like(LOC100814760) coding protein psRNATarget
XM_006594137.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:605   ACCGUUCAAGAAAGCCUGUGGAA   627

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100817197), transcript variant X2, mRNA growth-regulating factor 3-like(LOC100817197) coding protein psRNATarget
XM_003542518.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:617   ACCGUUCAAGAAAGCCUGUGGAA   639

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100817197), transcript variant X1, mRNA growth-regulating factor 3-like(LOC100817197) coding protein psRNATarget
XM_003553541.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:1141   ACCGUUCAAGAAAGCCUGUGGAA   1163

3.0 PREDICTED: Glycine max growth-regulating factor 3-like (LOC100814842), mRNA growth-regulating factor 3-like(LOC100814842) coding protein psRNATarget
XM_014777701.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:821   ACCGUUCAAGAAAGCCUGUGGAA   843

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100806024), transcript variant X2, mRNA growth-regulating factor 5-like(LOC100806024) coding protein psRNATarget
XM_003529787.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  ||*||||||||||||-|||||||
targets:863   ACCGUUCAAGAAAGCCUGUGGAA   885

3.0 PREDICTED: Glycine max growth-regulating factor 5-like (LOC100806024), transcript variant X1, mRNA growth-regulating factor 5-like(LOC100806024) coding protein psRNATarget
BT090627.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:370   AUCGUUCAAGAAAGCCUGUGGAA   392

3.0 Soybean clone JCVI-FLGm-4P14 unknown mRNA NA coding protein psRNATarget
XM_014761974.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:444   AUCGUUCAAGAAAGCCUGUGGAA   466

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100814271), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100814271) coding protein psRNATarget
XM_003534897.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:441   AUCGUUCAAGAAAGCCUGUGGAA   463

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100814271), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100814271) coding protein psRNATarget
XM_014767399.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:388   AUCGUUCAAGAAAGCCUGUGGAA   410

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100781613), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100781613) coding protein psRNATarget
XM_003547454.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:387   AUCGUUCAAGAAAGCCUGUGGAA   409

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100781613), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100781613) coding protein psRNATarget
XM_006573382.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:762   AUCGUUCAAGAAAGCCUGUGGAA   784

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X3, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
XM_003516424.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:753   AUCGUUCAAGAAAGCCUGUGGAA   775

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X2, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
XM_006573381.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:760   AUCGUUCAAGAAAGCCUGUGGAA   782

3.0 PREDICTED: Glycine max growth-regulating factor 9-like (LOC100795050), transcript variant X1, mRNA growth-regulating factor 9-like(LOC100795050) coding protein psRNATarget
NM_001248920.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:771   AUCGUUCAAGAAAGCCUGUGGAA   793

3.0 Glycine max QLQ and WRC domain-containing protein (LOC100306494), mRNA uncharacterized LOC100306494(LOC100306494) coding protein psRNATarget
XM_006576092.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:777   AUCGUUCAAGAAAGCCUGUGGAA   799

3.0 PREDICTED: Glycine max uncharacterized LOC100306494 (LOC100306494), transcript variant X1, mRNA uncharacterized LOC100306494(LOC100306494) coding protein psRNATarget
XM_006593881.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:734   AUCGUUCAAGAAAGCCUGUGGAA   756

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget
XM_014765435.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:737   AUCGUUCAAGAAAGCCUGUGGAA   759

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X3, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget
XM_014765434.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:740   AUCGUUCAAGAAAGCCUGUGGAA   762

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100783524), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100783524) coding protein psRNATarget
XM_006595936.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:1137   AUCGUUCAAGAAAGCCUGUGGAA   1159

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807080), mRNA growth-regulating factor 1-like(LOC100807080) coding protein psRNATarget
XM_014773156.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:890   AUCGUUCAAGAAAGCCUGUGGAA   912

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X2, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549320.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:1145   AUCGUUCAAGAAAGCCUGUGGAA   1167

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100819396), mRNA growth-regulating factor 1-like(LOC100819396) coding protein psRNATarget
XM_014773155.1
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:1106   AUCGUUCAAGAAAGCCUGUGGAA   1128

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100807610), transcript variant X1, mRNA growth-regulating factor 1-like(LOC100807610) coding protein psRNATarget
XM_003549319.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  |=*||||||||||||-|||||||
targets:1134   AUCGUUCAAGAAAGCCUGUGGAA   1156

3.0 PREDICTED: Glycine max growth-regulating factor 1-like (LOC100818860), mRNA growth-regulating factor 1-like(LOC100818860) coding protein psRNATarget
XM_006578811.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  *|*||||||||||||-|||||||
targets:1112   CCCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_003522484.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  *|*||||||||||||-|||||||
targets:1112   CCCGUUCAAGAAAGCCUGUGGAA   1134

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100803096), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100803096) coding protein psRNATarget
XM_006581609.2
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  *|*||||||||||||-|||||||
targets:1099   CCCGUUCAAGAAAGCCUGUGGAA   1121

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X2, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget
XM_003526701.3
ncRNA:22   UGUCAAGUUCUUUCG-ACACCUU   1
  *|*||||||||||||-|||||||
targets:1101   CCCGUUCAAGAAAGCCUGUGGAA   1123

3.0 PREDICTED: Glycine max growth-regulating factor 7-like (LOC100796948), transcript variant X1, mRNA growth-regulating factor 7-like(LOC100796948) coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
2 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
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