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BaseInfo

ncRNA ID gma-miR4363
Species Glycine max
Class miRNA
Genome position chr17:19536435-19536549 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 92 - CGAUUACCAGAAGGCUUAUUAG - 113
Stem-loop(if miRNA)      GG      --                CAUCCAG              -CA  AA
GCCUA  AUAGGC  UCUGGUAAUCGAUUAC       UGUAAUCGAUUACA   UG  C
|||||  ||||||  ||||||||||||||||       ||||||||||||||   ||
CGGAU  UAUUCG  AGACCAUUAGCUAAUG       ACAUUAGCUAAUGU   AC  A
     --      GA                UCCUACA              CCG  GG
Stem-loop sequence GCCUAGGAUAGGCUCUGGUAAUCGAUUACCAUCCAGUGUAAUCGAUUACACAUGAACAGGCAGCCUGUAAUCGAUUACAACAUCCUGUAAUCGAUUACCAGAAGGCUUAUUAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095004.1
ncRNA:22   GAUUAUUCGGAAGACCAUUAGC   1
  ||*||**|||||||||||||||
targets:204   CUCAUUUGCCUUCUGGUAAUCG   225

2.0 Soybean clone JCVI-FLGm-6H1 unknown mRNA NA coding protein psRNATarget
XM_006577138.2
ncRNA:22   GAUUAUUCGGAAGACCAUUAGC   1
  *||||||*||||||||||||*|
targets:1507   AUAAUAACCCUUCUGGUAAUGG   1528

2.5 PREDICTED: Glycine max uncharacterized LOC100808926 (LOC100808926), transcript variant X2, mRNA uncharacterized LOC100808926(LOC100808926) coding protein psRNATarget
XM_006577137.2
ncRNA:22   GAUUAUUCGGAAGACCAUUAGC   1
  *||||||*||||||||||||*|
targets:1679   AUAAUAACCCUUCUGGUAAUGG   1700

2.5 PREDICTED: Glycine max uncharacterized LOC100808926 (LOC100808926), transcript variant X1, mRNA uncharacterized LOC100808926(LOC100808926) coding protein psRNATarget
XM_003554552.3
ncRNA:22   GAUUAUUCGGAAGACCAUUAGC   1
  *||||||*||||||||||||*|
targets:1491   AUAAUAACCCUUCUGGUAAUGG   1512

2.5 PREDICTED: Glycine max uncharacterized LOC100794608 (LOC100794608), mRNA uncharacterized LOC100794608(LOC100794608) coding protein psRNATarget

Reference

1 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).