ncRNA ID | gma-miR4363 |
Species | Glycine max |
Class | miRNA |
Genome position | chr17:19536435-19536549 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 92 - CGAUUACCAGAAGGCUUAUUAG - 113 |
Stem-loop(if miRNA) |
     GG      --                CAUCCAG              -CA  AA GCCUA  AUAGGC  UCUGGUAAUCGAUUAC       UGUAAUCGAUUACA   UG  C |||||  ||||||  ||||||||||||||||       ||||||||||||||   || CGGAU  UAUUCG  AGACCAUUAGCUAAUG       ACAUUAGCUAAUGU   AC  A      --      GA                UCCUACA              CCG  GG |
Stem-loop sequence | GCCUAGGAUAGGCUCUGGUAAUCGAUUACCAUCCAGUGUAAUCGAUUACACAUGAACAGGCAGCCUGUAAUCGAUUACAACAUCCUGUAAUCGAUUACCAGAAGGCUUAUUAGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT095004.1 |
|
2.0 | Soybean clone JCVI-FLGm-6H1 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_006577138.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100808926 (LOC100808926), transcript variant X2, mRNA | uncharacterized LOC100808926(LOC100808926) | coding protein | psRNATarget | |||||||||
XM_006577137.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100808926 (LOC100808926), transcript variant X1, mRNA | uncharacterized LOC100808926(LOC100808926) | coding protein | psRNATarget | |||||||||
XM_003554552.3 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100794608 (LOC100794608), mRNA | uncharacterized LOC100794608(LOC100794608) | coding protein | psRNATarget |
1 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |