| ncRNA ID | gma-miR162c |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr17:10181489-10181607 [+] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 84 - UCGAUAAACCUCUGCAUCCAG - 104 |
| Stem-loop(if miRNA) |
GAGAU UG --- A G C C UC C AAUUUGG GA GAGG AAGU C CUGGA GCAG GGUU AUCGAUC UUC UG UUGUG A |||| |||| | ||||| |||| |||| ||||||| ||| || ||||| CUCC UUCA G GACCU CGUC CCAA UAGCUGG AAG AC AACAC G ----- GU CUC C A U A CU A -----GA AA |
| Stem-loop sequence | GAGAUGAGGUGAAGUCACUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGAAUUUGGUUGUGGAAGAACACAAAGCAAGAAUCGGUCGAUAAACCUCUGCAUCCAGCGCUCACUUUGCCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006577296.2 |
|
3.0 | PREDICTED: Glycine max endoribonuclease Dicer homolog 1-like (LOC100780953), mRNA | endoribonuclease Dicer homolog 1-like(LOC100780953) | coding protein | psRNATarget | |||||||||
| XM_006604859.1 |
|
3.0 | PREDICTED: Glycine max endoribonuclease Dicer homolog 1-like (LOC100811631), mRNA | endoribonuclease Dicer homolog 1-like(LOC100811631) | coding protein | psRNATarget |
| 1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |
| 2 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |