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BaseInfo

ncRNA ID gma-miR1509a
Species Glycine max
Class miRNA
Genome position chr17:10099759-10099869 [+]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 11 - UUAAUCAAGGAAAUCACGGUCG - 32
Stem-loop(if miRNA) CU    -CU  -             U        C --U U -U      -AAGAA  U
  GCAU   UC UUAAUCAAGGAAA CACGGUCG G   G G  GCCGGA      AG G
  ||||   || ||||||||||||| |||||||| |   | |  ||||||      ||
  CGUG   AG AAUUGGUUCCUUU GUGCCAGC C   C C  UGGCCU      UC G
--    UAU  C             -        U UUU U UU      CUAGUG  C
Stem-loop sequence CUGCAUCUUCUUAAUCAAGGAAAUCACGGUCGCGUGUGUGCCGGAAAGAAAGUGGCCUGUGAUCUCCGGUUUCUCUUUCUCGACCGUGUUUCCUUGGUUAACGAUAUGUGC

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:19084500
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules";
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X;
Biochem Biophys Res Commun. 378:799-803(2009).
3 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
4 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).