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BaseInfo

ncRNA ID gma-miR319l
Species Glycine max
Class miRNA
Genome position chr17:9436178-9436279 [-]
Reference genome v1.0
Source miRBase
Length 22
Mature sequence(if miRNA) 14 - UUGGACUGAAGGGAGCUCCUUC - 35
Stem-loop(if miRNA) U     G  C    AU            G   C        CCCU       C
 GAAAG UG AGAA  AGGAGUUCCCUU CAG CCAAAACA    GCAUGAA U
 ||||| || ||||  |||||||||||| ||| ||||||||    |||||||
 CUUUC AC UCUU  UCCUCGAGGGAA GUC GGUUUUGU    UGUACUU A
A     -  U    CU            -   A        ----       C
Stem-loop sequence UGAAAGGUGCAGAAAUAGGAGUUCCCUUGCAGCCCAAAACACCCUGCAUGAACUACUUCAUGUUGUUUUGGACUGAAGGGAGCUCCUUCUUCUUCACUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242604.1
ncRNA:22   CUUCCUCGAGGGAAGUCAGGUU   1
  ||||||||||||||||||||||
targets:11   GAAGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2985353 NA coding protein psRNATarget
JB170935.1
ncRNA:22   CUUCCUCGAGGGAAGUCAGGUU   1
  ||||||||||||||||||||||
targets:11   GAAGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2559767 NA coding protein psRNATarget
HI410474.1
ncRNA:22   CUUCCUCGAGGGAAGUCAGGUU   1
  ||||||||||||||||||||||
targets:11   GAAGGAGCUCCCUUCAGUCCAA   32

0.0 Sequence 8599 from Patent EP2074227 NA coding protein psRNATarget
BT098668.1
ncRNA:22   CUUCCUCGAGGGAAGUCAGGUU   1
  ||||||||||||||||||||||
targets:278   GAAGGAGCUCCCUUCAGUCCAA   299

0.0 Soybean clone JCVI-FLGm-12F22 unknown mRNA NA coding protein psRNATarget

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).