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BaseInfo

ncRNA ID gma-miR9742
Species Glycine max
Class miRNA
Genome position chr17:8813050-8813147 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 72 - UGUGUUGUUUGUUUUGUAGCA - 92
Stem-loop(if miRNA) -                                        -  UGUAU
 CCUAAUGCUACAAAACAAACAACACAAACACAGUCAAGAA GA     U
 |||||||||||||||||||||||||||||||||||||||| ||
 GGAUUACGAUGUUUUGUUUGUUGUGUUUGUGUCAGUUCUU CU     A
A                                        U  UUUGU
Stem-loop sequence CCUAAUGCUACAAAACAAACAACACAAACACAGUCAAGAAGAUGUAUUAUGUUUUCUUUCUUGACUGUGUUUGUGUUGUUUGUUUUGUAGCAUUAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003531351.3
ncRNA:21   ACGAUGUUUUGUUUGUUGUGU   1
  ****|||||||||||||||||
targets:5   GCAAACAAAACAAACAACACA   25

2.0 PREDICTED: Glycine max probable mediator of RNA polymerase II transcription subunit 26c (LOC100796457), transcript variant X2, mRNA probable mediator of RNA polymerase II transcription subunit 26c(LOC100796457) coding protein psRNATarget
XM_014770574.1
ncRNA:21   ACGAUGUUUUGUUUGUUGUGU   1
  **|||=|||||*|||||||||
targets:624   ACCUAUAAAACCAACAACACA   644

2.5 PREDICTED: Glycine max uncharacterized LOC106796926 (LOC106796926), mRNA uncharacterized LOC106796926(LOC106796926) coding protein psRNATarget
XM_003529827.3
ncRNA:21   ACGAUGUUUUGUUUGUUGUGU   1
  *|||=*=||||||||||||||
targets:252   AGCUGAGAAACAAACAACACA   272

3.0 PREDICTED: Glycine max beta-galactosidase 1-like (LOC100785688), mRNA beta-galactosidase 1-like(LOC100785688) coding protein psRNATarget

Reference

1 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).