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BaseInfo

ncRNA ID	ath-miR5998a
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:3247236-3247432 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	27 - ACAGUUUGUGUUUUGUUUUGU - 47
Stem-loop(if miRNA)	-UG     -------AAG                                      UUU       UUCGUUACUCUCCACC    CCGCCAUGUACAAUUCUCAAAC    AACUU          GAGAAAACAAAUUGGAACAGUUUGUGUUUUGUUUUGUG   UGUUGGA                GUCG                      U    |||||          ||||||||||||||||||||||||||||||||||||||   |||||||                ||||    UUGAA          CUCUUUUGUUUAACCUUGUCAAACACAAAACAAAACAC   ACAACCU                AACC                      C CAG     GAGUAAAACA                                      --U       -----------UGUUU    UUCUUAACGGAGGUUCUUCAGU
Stem-loop sequence	UGAACUUAAGGAGAAAACAAAUUGGAACAGUUUGUGUUUUGUUUUGUGUUUUGUUGGAUUCGUUACUCUCCACCGUCGCCGCCAUGUACAAUUCUCAAACUCUGACUUCUUGGAGGCAAUUCUUCCAAUUUGUUCCAACAUCACAAAACAAAACACAAACUGUUCCAAUUUGUUUUCUCACAAAAUGAGAAGUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX817303.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   ||||||||||||||||||||| targets:173   ACAAAACAAAACACAAACUGU   193 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL14ZD06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK117361.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   ||||||||||||||||||||| targets:180   ACAAAACAAAACACAAACUGU   200 Target Full Sequence	0.0	Arabidopsis thaliana At1g71910 mRNA for unknown protein, complete cds, clone: RAFL16-93-D09	NA	coding protein	psRNATarget
NM_105849.3	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   ||||||||||||||||||||| targets:180   ACAAAACAAAACACAAACUGU   200 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT1G71910)	coding protein	psRNATarget
BT001995.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   |*||||*|||||||||||||| targets:12   AAAAAAAAAAACACAAACUGU   32 Target Full Sequence	1.0	Arabidopsis thaliana predicted protein (At4g22820) mRNA, complete cds	NA	coding protein	psRNATarget
BX827935.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   *||=||*|||||||||||||| targets:110   UCAGAAAAAAACACAAACUGU   130 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH36ZC12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001334508.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   |||||||||||||||||||** targets:180   ACAAAACAAAACACAAACUAA   200 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT1G71910)	coding protein	psRNATarget
NM_001341364.1	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   *=||||||||||*|||||||* targets:34   UUAAAACAAAACCCAAACUGA   54 Target Full Sequence	2.5	Arabidopsis thaliana TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein mRNA	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein(AT4G19645)	coding protein	psRNATarget
NM_148358.3	ncRNA:21   UGUUUUGUUUUGUGUUUGACA   1   *=||||||||||*|||||||* targets:34   UUAAAACAAAACCCAAACUGA   54 Target Full Sequence	2.5	Arabidopsis thaliana TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein mRNA	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein(AT4G19645)	coding protein	psRNATarget
AF360174.1	ncRNA:21   UGUUUUGUUUUGUGU-UUGACA   1   |*|||||||||||||-|||||| targets:20   AAAAAACAAAACACAGAACUGU   41 Target Full Sequence	3.0	Arabidopsis thaliana unknown protein (At4g30340) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001342006.1	ncRNA:21   UGUUUUGUUUUGUGU-UUGACA   1   |*|||||||||||||-|||||| targets:20   AAAAAACAAAACACAGAACUGU   41 Target Full Sequence	3.0	Arabidopsis thaliana diacylglycerol kinase 7 (DGK7), mRNA	diacylglycerol kinase 7(DGK7)	coding protein	psRNATarget
NM_119180.6	ncRNA:21   UGUUUUGUUUUGUGU-UUGACA   1   |*|||||||||||||-|||||| targets:100   AAAAAACAAAACACAGAACUGU   121 Target Full Sequence	3.0	Arabidopsis thaliana diacylglycerol kinase 7 (DGK7), mRNA	diacylglycerol kinase 7(DGK7)	coding protein	psRNATarget

Reference

1	PMID:22221297 "Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012).