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BaseInfo

ncRNA ID	gma-miR1513c
Species	Glycine max
Class	miRNA
Genome position	chr17:1401433-1401523 [-]
Reference genome	v1.0
Source	miRBase
Length	19
Mature sequence(if miRNA)	66 - UAUGAGAGAAAGCCAUGAC - 84
Stem-loop(if miRNA)	CU         G  A                 C   GAAAU GAU  GAUAUGAGA AA GCCAUGACUUACACACG AUU     C |||  ||||||||| || ||||||||||||||||| |||     U CUA  CUAUACUCU UU CGGUACUGAAUGUGUGU UAA     A    AU         A  A                 A   AUUGA
Stem-loop sequence	GAUCUGAUAUGAGAGAAAGCCAUGACUUACACACGCAUUGAAAUCUAAGUUAAAUAUGUGUGUAAGUCAUGGCAUUAUCUCAUAUCUAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006584331.1	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   |||||||=||||||||||| targets:108   GUCAUGGUUUUCUCUCAUA   126 Target Full Sequence	1.5	PREDICTED: Glycine max F-box protein CPR30-like (LOC102664265), mRNA	F-box protein CPR30-like(LOC102664265)	coding protein	psRNATarget
XM_014777448.1	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   |||||||=||||||||||* targets:93   GUCAUGGUUUUCUCUCAUC   111 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC106799253), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC106799253)	coding protein	psRNATarget
XM_006582485.1	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   |||||||||||||||*||* targets:96   GUCAUGGCUUUCUCUAAUU   114 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669359), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102669359)	coding protein	psRNATarget
XM_006582486.1	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   ||||||||||||*|||||* targets:90   GUCAUGGCUUUCCCUCAUU   108 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669490), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102669490)	coding protein	psRNATarget
XM_003550011.3	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   ||||||||||||||*|||* targets:283   GUCAUGGCUUUCUCACAUC   301 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC100796474), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC100796474)	coding protein	psRNATarget
XM_006585753.2	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   |||||||||||||||*||* targets:192   GUCAUGGCUUUCUCUGAUC   210 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC100790318), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g23880-like(LOC100790318)	coding protein	psRNATarget
BT093842.1	ncRNA:19   CAGUACCGAAAGAGAGUAU   1   |*|||*||||||||||||= targets:392   GCCAUCGCUUUCUCUCAUG   410 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-17H22 unknown mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).