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BaseInfo

ncRNA ID	gma-miR393j
Species	Glycine max
Class	miRNA
Genome position	chr16:33891070-33891223 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	14 - UUCCAAAGGGAUCGCAUUGAUC - 35
Stem-loop(if miRNA)	UGUG             A            U        UC   UA   G   GAACUU    U         UGCAUG     GGUGGAGAGUUCC AAGGGAUCGCAU GAUCUAAU  UUG  GAU CCU      GCAA CUUGAAUCU      C     ||||||||||||| |||||||||||| ||||||||  |||  ||| |||      |||| |||||||||     CUACCUUUCAAGG UUCCCUAGCGUA CUAGGUUA  GAC  UUG GGA      CGUU GGAUUUAGG      A -UAA             A            -        UU   --   G   --AUUU    U         UCCUUA
Stem-loop sequence	UGUGGGUGGAGAGUUCCAAAGGGAUCGCAUUGAUCUAAUUCUUGUAGAUGCCUGAACUUGCAAUCUUGAAUCUUGCAUGCAAUUCCUGGAUUUAGGUUUGCUUUAAGGGGUUCAGUUAUUGGAUCAUGCGAUCCCUUAGGAACUUUCCAUCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287367.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1732   GA-CAAUGCGAUCCCUUUGGAU   1752 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-51-J22	NA	coding protein	psRNATarget
AK285863.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1623   GA-CAAUGCGAUCCCUUUGGAU   1643 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-17-K05	NA	coding protein	psRNATarget
XM_003536233.3	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1717   GA-CAAUGCGAUCCCUUUGGAU   1737 Target Full Sequence	1.0	PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100779337), transcript variant X1, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1(LOC100779337)	coding protein	psRNATarget
AK286056.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1707   GA-CAAUGCGAUCCCUUUGGAU   1727 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-21-A01	NA	coding protein	psRNATarget
XM_003518902.2	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1738   GA-CAAUGCGAUCCCUUUGGAU   1758 Target Full Sequence	1.0	PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100809794), transcript variant X1, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1(LOC100809794)	coding protein	psRNATarget
XM_014771942.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1758   GA-CAAUGCGAUCCCUUUGGAU   1778 Target Full Sequence	1.0	PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1 (LOC100779021), mRNA	protein TRANSPORT INHIBITOR RESPONSE 1(LOC100779021)	coding protein	psRNATarget
XM_014773943.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:1764   GA-CAAUGCGAUCCCUUUGGAU   1784 Target Full Sequence	1.0	PREDICTED: Glycine max protein TRANSPORT INHIBITOR RESPONSE 1-like (LOC100816241), transcript variant X2, mRNA	protein TRANSPORT INHIBITOR RESPONSE 1-like(LOC100816241)	coding protein	psRNATarget
AK285977.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   ||-||||||||||||||||||* targets:2109   GA-CAAUGCGAUCCCUUUGGAU   2129 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-19-K09	NA	coding protein	psRNATarget
AK286220.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   *|*||||||||||||||||||* targets:2268   AAACAAUGCGAUCCCUUUGGAU   2289 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-24-D14	NA	coding protein	psRNATarget
XM_003548885.3	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   *|*||||||||||||||||||* targets:2265   AAACAAUGCGAUCCCUUUGGAU   2286 Target Full Sequence	1.0	PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2 (LOC100788209), mRNA	protein AUXIN SIGNALING F-BOX 2(LOC100788209)	coding protein	psRNATarget
XM_003553924.3	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   *|*||||||||||||||||||* targets:2306   AAACAAUGCGAUCCCUUUGGAU   2327 Target Full Sequence	1.0	PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2-like (LOC100812516), mRNA	protein AUXIN SIGNALING F-BOX 2-like(LOC100812516)	coding protein	psRNATarget
XM_003518079.3	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   *|*|=||||||||||||||||* targets:2239   AAACGAUGCGAUCCCUUUGGAU   2260 Target Full Sequence	2.0	PREDICTED: Glycine max protein AUXIN SIGNALING F-BOX 2-like (LOC100788040), mRNA	protein AUXIN SIGNALING F-BOX 2-like(LOC100788040)	coding protein	psRNATarget
XM_014769180.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   **|*|=||*||||||||||||| targets:1526   CCUGAGUGAGAUCCCUUUGGAA   1547 Target Full Sequence	3.0	PREDICTED: Glycine max UPF0496 protein At2g18630-like (LOC100786579), transcript variant X3, mRNA	UPF0496 protein At2g18630-like(LOC100786579)	coding protein	psRNATarget
XM_014769179.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   **|*|=||*||||||||||||| targets:1621   CCUGAGUGAGAUCCCUUUGGAA   1642 Target Full Sequence	3.0	PREDICTED: Glycine max UPF0496 protein At2g18630-like (LOC100786579), transcript variant X2, mRNA	UPF0496 protein At2g18630-like(LOC100786579)	coding protein	psRNATarget
XM_014769178.1	ncRNA:22   CUAGUUACGCUAGGGAAACCUU   1   **|*|=||*||||||||||||| targets:1685   CCUGAGUGAGAUCCCUUUGGAA   1706 Target Full Sequence	3.0	PREDICTED: Glycine max UPF0496 protein At2g18630-like (LOC100786579), transcript variant X1, mRNA	UPF0496 protein At2g18630-like(LOC100786579)	coding protein	psRNATarget

Reference

1	PMID:22559273 "Genome organization and characteristics of soybean microRNAs"; Turner M, Yu O, Subramanian S; BMC Genomics. 13:169(2012).