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BaseInfo

ncRNA ID gma-miR1510a-3p
Species Glycine max
Class miRNA
Genome position chr16:31518908-31519000 [+]
Reference genome v1.0
Source miRBase
Length 23
Mature sequence(if miRNA) 61 - UUGUUGUUUUACCUAUUCCACCC - 83
Stem-loop(if miRNA) -U       CU  A                UG    -     -   G
  UAUGGAA  GG GGGAUAGGUAAAACAA  ACUG CUGUA UAA U
  |||||||  || ||||||||||||||||  |||| ||||| |||
  GUACCUU  CC CCUUAUCCAUUUUGUU  UGAU GAUAU GUU A
AU       AC  A                GU    U     U   A
Stem-loop sequence UUAUGGAACUGGAGGGAUAGGUAAAACAAUGACUGCUGUAUAAGUAAUUGUUAUAGUUAGUUGUUGUUUUACCUAUUCCACCCAUUCCAUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768292.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X8, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768289.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X5, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768288.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X4, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768286.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X2, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768287.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X3, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768291.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X7, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768290.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X6, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768293.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:994   GGCUAGAAUAGGUAAAACAACAG   1016

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X9, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014768285.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ||*|*|||||||||||||||||=
targets:998   GGCUAGAAUAGGUAAAACAACAG   1020

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC102665522), transcript variant X1, mRNA TMV resistance protein N-like(LOC102665522) coding protein psRNATarget
XM_014767478.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|*|||||*|||||||||||||=
targets:924   AGAUGGAACAGGUAAAACAACAG   946

2.0 PREDICTED: Glycine max disease resistance protein RML1A-like (LOC102665383), transcript variant X1, mRNA disease resistance protein RML1A-like(LOC102665383) coding protein psRNATarget
XM_014767479.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|*|||||*|||||||||||||=
targets:924   AGAUGGAACAGGUAAAACAACAG   946

2.0 PREDICTED: Glycine max disease resistance protein RML1A-like (LOC102665383), transcript variant X2, mRNA disease resistance protein RML1A-like(LOC102665383) coding protein psRNATarget
XM_014774549.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  |||*||*||*|||||||||||||
targets:1388   GGGAGGCAUUGGUAAAACAACAA   1410

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100808685), mRNA TMV resistance protein N-like(LOC100808685) coding protein psRNATarget
JB170923.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*||=||||||||||||||=|
targets:9   UGGAGGGAUAGGUAAAACAACGA   31

2.5 Sequence 8587 from Patent EP2559767 NA coding protein psRNATarget
LQ242592.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*||=||||||||||||||=|
targets:9   UGGAGGGAUAGGUAAAACAACGA   31

2.5 Sequence 8587 from Patent EP2985353 NA coding protein psRNATarget
HI410462.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*||=||||||||||||||=|
targets:9   UGGAGGGAUAGGUAAAACAACGA   31

2.5 Sequence 8587 from Patent EP2074227 NA coding protein psRNATarget
XM_006599393.2
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|||||*|||||||||||*||||
targets:844   UGGUGGUAUAGGUAAAACCACAA   866

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100805685), mRNA TMV resistance protein N-like(LOC100805685) coding protein psRNATarget
XM_014768535.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||||||=|=||||||||||||*
targets:748   CGGUGGAGUGGGUAAAACAACAC   770

3.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X2, mRNA TMV resistance protein N-like(LOC100817950) coding protein psRNATarget
XM_014768534.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||||||=|=||||||||||||*
targets:748   CGGUGGAGUGGGUAAAACAACAC   770

3.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X1, mRNA TMV resistance protein N-like(LOC100817950) coding protein psRNATarget
BT096107.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:696   UGGCGGAGUGGGUAAAACAACAC   718

3.0 Soybean clone JCVI-FLGm-20K4 unknown mRNA NA coding protein psRNATarget
AF175395.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:654   UGGCGGAGUGGGUAAAACAACAC   676

3.0 Glycine max resistance protein MG23 mRNA, partial cds NA coding protein psRNATarget
FJ014878.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:654   UGGCGGAGUGGGUAAAACAACAC   676

3.0 Glycine max clone cw17 resistance protein mRNA, complete cds NA coding protein psRNATarget
XM_014768629.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:716   UGGCGGAGUGGGUAAAACAACAC   738

3.0 PREDICTED: Glycine max TMV resistance protein N (LOC100795233), mRNA TMV resistance protein N(LOC100795233) coding protein psRNATarget
XM_003548835.3
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:785   UGGCGGAGUGGGUAAAACAACAC   807

3.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100798421), mRNA TMV resistance protein N-like(LOC100798421) coding protein psRNATarget
XM_006599301.2
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *||*|||=|=||||||||||||*
targets:813   UGGCGGAGUGGGUAAAACAACAC   835

3.0 PREDICTED: Glycine max protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 (LOC547562), mRNA protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1(LOC547562) coding protein psRNATarget
XM_006599308.2
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  ***||||=|=||||||||||||*
targets:775   CCCUGGAGUGGGUAAAACAACAC   797

3.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100796826), mRNA TMV resistance protein N-like(LOC100796826) coding protein psRNATarget
AF175394.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|**|||=|=||||||||||||*
targets:654   CGCCGGAGUGGGUAAAACAACAC   676

3.0 Glycine max resistance protein LM12 mRNA, partial cds NA coding protein psRNATarget
AK245668.1
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|**|||=|=||||||||||||*
targets:714   CGCCGGAGUGGGUAAAACAACAC   736

3.0 Glycine max cDNA, clone: GMFL01-37-C18 NA coding protein psRNATarget
XM_003547928.3
ncRNA:23   CCCACCUUAUCCAUUUUGUUGUU   1
  *|**|||=|=||||||||||||*
targets:811   CGCCGGAGUGGGUAAAACAACAC   833

3.0 PREDICTED: Glycine max TMV resistance protein N (LOC547561), mRNA TMV resistance protein N(LOC547561) coding protein psRNATarget

Reference

1 PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots";
Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O;
BMC Genomics. 9:160(2008).
2 PMID:19084500
"Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules";
Wang Y, Li P, Cao X, Wang X, Zhang A, Li X;
Biochem Biophys Res Commun. 378:799-803(2009).
3 PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max";
Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G;
BMC Bioinformatics. 11 Suppl 1:S14(2010).
4 PMID:21504877
"MicroRNAs in the shoot apical meristem of soybean";
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL;
J Exp Bot. 62:2495-2506(2011).
5 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
6 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).
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