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BaseInfo

ncRNA ID	gma-miR5767
Species	Glycine max
Class	miRNA
Genome position	chr16:30416422-30416532 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	81 - UGGAGGACCUUUGAAGGUGCA - 101
Stem-loop(if miRNA)	U    ----GC      A  ACCUUUGAAGGUGCAAUUUGAUACACAAAUCGGACAC  GGGU      UCUUGG GG                                     C  ||||      |||||| ||  CCUA      GGAACA CA                                     A U    GACAAG      -  GUUGUGAUGUUCCAGAGACAGAAUUACCACUCAAAUU
Stem-loop sequence	UGGGUGCUCUUGGAGGACCUUUGAAGGUGCAAUUUGAUACACAAAUCGGACACCAUUAAACUCACCAUUAAGACAGAGACCUUGUAGUGUUGACACAAGGGAACAGAUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT090591.1	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   ||||||||||||||||||||| targets:308   UGCACCUUCAAAGGUCCUCCA   328 Target Full Sequence	0.0	Soybean clone JCVI-FLGm-4J16 unknown mRNA	NA	coding protein	psRNATarget
NM_001248556.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   ||||||||||||||||||||| targets:305   UGCACCUUCAAAGGUCCUCCA   325 Target Full Sequence	0.0	Glycine max uncharacterized LOC100306468 (LOC100306468), mRNA	uncharacterized LOC100306468(LOC100306468)	coding protein	psRNATarget
XM_006574586.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   ||||||||||||||||||||* targets:257   UGCACCUUCAAAGGUCCUCCC   277 Target Full Sequence	1.0	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102663749), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102663749)	coding protein	psRNATarget
XM_006585207.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   ||||||||||||||||*|||| targets:453   UGCACCUUCAAAGGUCAUCCA   473 Target Full Sequence	1.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102662775), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102662775)	coding protein	psRNATarget
XM_006580571.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   |||||||*||||||||*|||| targets:164   UGCACCUCCAAAGGUCGUCCA   184 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102668331), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102668331)	coding protein	psRNATarget
XM_006580610.1	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   |||||||*||||||||*|||| targets:134   UGCACCUCCAAAGGUCGUCCA   154 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102660661), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102660661)	coding protein	psRNATarget
XM_006586537.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   |||||||*||||||||*|||| targets:164   UGCACCUCCAAAGGUCGUCCA   184 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102661597), mRNA	F-box/kelch-repeat protein At3g23880-like(LOC102661597)	coding protein	psRNATarget
XM_003526647.3	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||||*||||||||=||||| targets:218   GCCACCGUCAAAGGUUCUCCA   238 Target Full Sequence	2.5	PREDICTED: Glycine max polypyrimidine tract-binding protein homolog 2-like (LOC100813651), transcript variant X2, mRNA	polypyrimidine tract-binding protein homolog 2-like(LOC100813651)	coding protein	psRNATarget
XM_006581562.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||||*||||||||=||||| targets:249   GCCACCGUCAAAGGUUCUCCA   269 Target Full Sequence	2.5	PREDICTED: Glycine max polypyrimidine tract-binding protein homolog 2-like (LOC100813651), transcript variant X3, mRNA	polypyrimidine tract-binding protein homolog 2-like(LOC100813651)	coding protein	psRNATarget
XM_006581561.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||||*||||||||=||||| targets:729   GCCACCGUCAAAGGUUCUCCA   749 Target Full Sequence	2.5	PREDICTED: Glycine max polypyrimidine tract-binding protein homolog 2-like (LOC100813651), transcript variant X1, mRNA	polypyrimidine tract-binding protein homolog 2-like(LOC100813651)	coding protein	psRNATarget
XM_006595942.2	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||=|*|||||||||||||* targets:598   AUCAUCAUCAAAGGUCCUCCU   618 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100804936 (LOC100804936), transcript variant X3, mRNA	uncharacterized LOC100804936(LOC100804936)	coding protein	psRNATarget
BT097321.1	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||=|*|||||||||||||* targets:862   AUCAUCAUCAAAGGUCCUCCU   882 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-16G3 unknown mRNA	NA	coding protein	psRNATarget
XM_003544456.3	ncRNA:21   ACGUGGAAGUUUCCAGGAGGU   1   **||=|*|||||||||||||* targets:855   AUCAUCAUCAAAGGUCCUCCU   875 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100804936 (LOC100804936), transcript variant X1, mRNA	uncharacterized LOC100804936(LOC100804936)	coding protein	psRNATarget

Reference

1

PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).