Search result

BaseInfo

ncRNA ID gma-miR5041-3p
Species Glycine max
Class miRNA
Genome position chr16:30111920-30112070 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 107 - GUUGAGCAAGUUGAAGAUGAA - 127
Stem-loop(if miRNA) --------A    CUUAA G     -   - CUAGCACCAAUCAAGUGUCCUUUCCGCGUUCUCGAAAACUUUCAUCUUCAA
         GAAA     A UUGUU GGU G                                                   C
         ||||     | ||||| ||| |                                                   U
         GCCA     A GGGCU UUG A                                                   U
UACCUGUAA    ----- -     G   U AGUAGAAGUUGAACGAGUUGCUAUACUAAUAUGAACUCACAUGGCAACUCG
Stem-loop sequence AGAAACUUAAAGUUGUUGGUGCUAGCACCAAUCAAGUGUCCUUUCCGCGUUCUCGAAAACUUUCAUCUUCAACUUGCUCAACGGUACACUCAAGUAUAAUCAUAUCGUUGAGCAAGUUGAAGAUGAAUGUUGUCGGGAACCGAAUGUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006573757.2
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |*|||||*|||||||||||||
targets:657   UCCAUCUCCAACUUGCUCAAC   677

1.0 PREDICTED: Glycine max uncharacterized LOC100792788 (LOC100792788), transcript variant X2, mRNA uncharacterized LOC100792788(LOC100792788) coding protein psRNATarget
XM_014772323.1
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |*|||||*|||||||||||||
targets:550   UCCAUCUGCAACUUGCUCAAC   570

1.0 PREDICTED: Glycine max uncharacterized LOC102662693 (LOC102662693), transcript variant X1, mRNA uncharacterized LOC102662693(LOC102662693) coding protein psRNATarget
XM_003516681.3
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |*|||||*|||||||||||||
targets:656   UCCAUCUCCAACUUGCUCAAC   676

1.0 PREDICTED: Glycine max uncharacterized LOC100792788 (LOC100792788), transcript variant X1, mRNA uncharacterized LOC100792788(LOC100792788) coding protein psRNATarget
XM_006573758.2
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |*|||||*|||||||||||||
targets:657   UCCAUCUCCAACUUGCUCAAC   677

1.0 PREDICTED: Glycine max uncharacterized LOC100792788 (LOC100792788), transcript variant X3, mRNA uncharacterized LOC100792788(LOC100792788) coding protein psRNATarget
XM_006580613.1
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  **|||||||||||||*||||=
targets:197   AGCAUCUUCAACUUGAUCAAU   217

2.5 PREDICTED: Glycine max F-box protein At4g22390-like (LOC102661187), mRNA F-box protein At4g22390-like(LOC102661187) coding protein psRNATarget
XM_006579618.2
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  **|||||||||||||*||||=
targets:935   AGCAUCUUCAACUUGAUCAAU   955

2.5 PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669740), mRNA F-box/kelch-repeat protein At3g23880-like(LOC102669740) coding protein psRNATarget
XM_014778533.1
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  **|||||||||||||*||||=
targets:935   AGCAUCUUCAACUUGAUCAAU   955

2.5 PREDICTED: Glycine max F-box/kelch-repeat protein At3g23880-like (LOC102669375), mRNA F-box/kelch-repeat protein At3g23880-like(LOC102669375) coding protein psRNATarget
XM_006597431.2
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |||*||*|||||||||||||*
targets:2122   UUCCUCCUCAACUUGCUCAAA   2142

3.0 PREDICTED: Glycine max uncharacterized LOC100795405 (LOC100795405), transcript variant X2, mRNA uncharacterized LOC100795405(LOC100795405) coding protein psRNATarget
XM_006597430.2
ncRNA:21   AAGUAGAAGUUGAACGAGUUG   1
  |||*||*|||||||||||||*
targets:2140   UUCCUCCUCAACUUGCUCAAA   2160

3.0 PREDICTED: Glycine max uncharacterized LOC100795405 (LOC100795405), transcript variant X1, mRNA uncharacterized LOC100795405(LOC100795405) coding protein psRNATarget

Reference

1 PMID:21751852
"Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome";
Radwan O, Liu Y, Clough SJ;
Mol Plant Microbe Interact. 24:958-972(2011).
2 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).
© 2017 OPP-ncRBASE. All rights reserved.