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BaseInfo

ncRNA ID gma-miR5041-5p
Species Glycine max
Class miRNA
Genome position chr16:30111920-30112070 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 61 - UUUCAUCUUCAACUUGCUCAA - 81
Stem-loop(if miRNA) --------A    CUUAA G     -   - CUAGCACCAAUCAAGUGUCCUUUCCGCGUUCUCGAAAACUUUCAUCUUCAA
         GAAA     A UUGUU GGU G                                                   C
         ||||     | ||||| ||| |                                                   U
         GCCA     A GGGCU UUG A                                                   U
UACCUGUAA    ----- -     G   U AGUAGAAGUUGAACGAGUUGCUAUACUAAUAUGAACUCACAUGGCAACUCG
Stem-loop sequence AGAAACUUAAAGUUGUUGGUGCUAGCACCAAUCAAGUGUCCUUUCCGCGUUCUCGAAAACUUUCAUCUUCAACUUGCUCAACGGUACACUCAAGUAUAAUCAUAUCGUUGAGCAAGUUGAAGAUGAAUGUUGUCGGGAACCGAAUGUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014769901.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||**||||||||||||||||
targets:1862   AUGCACAAGUUGAAGAUGAAA   1882

2.0 PREDICTED: Glycine max uncharacterized LOC100777534 (LOC100777534), transcript variant X4, mRNA uncharacterized LOC100777534(LOC100777534) coding protein psRNATarget
XM_006575478.2
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||**||||||||||||||||
targets:1983   AUGCACAAGUUGAAGAUGAAA   2003

2.0 PREDICTED: Glycine max uncharacterized LOC100777534 (LOC100777534), transcript variant X3, mRNA uncharacterized LOC100777534(LOC100777534) coding protein psRNATarget
XM_014769904.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||**||||||||||||||||
targets:2043   AUGCACAAGUUGAAGAUGAAA   2063

2.0 PREDICTED: Glycine max uncharacterized LOC100777534 (LOC100777534), transcript variant X5, mRNA uncharacterized LOC100777534(LOC100777534) coding protein psRNATarget
XM_014769896.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||**||||||||||||||||
targets:2296   AUGCACAAGUUGAAGAUGAAA   2316

2.0 PREDICTED: Glycine max uncharacterized LOC100777534 (LOC100777534), transcript variant X2, mRNA uncharacterized LOC100777534(LOC100777534) coding protein psRNATarget
XM_006575477.2
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||**||||||||||||||||
targets:2430   AUGCACAAGUUGAAGAUGAAA   2450

2.0 PREDICTED: Glycine max uncharacterized LOC100777534 (LOC100777534), transcript variant X1, mRNA uncharacterized LOC100777534(LOC100777534) coding protein psRNATarget
AK285249.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  ||||||||||||||||||=|=
targets:1036   UUGAGCAAGUUGAAGAUGGAG   1056

2.5 Glycine max cDNA, clone: GMFL01-05-O01 NA coding protein psRNATarget
XM_006579741.2
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  ||||||||||||||||||=|=
targets:912   UUGAGCAAGUUGAAGAUGGAG   932

2.5 PREDICTED: Glycine max probable disease resistance protein At5g66900 (LOC100800632), transcript variant X2, mRNA probable disease resistance protein At5g66900(LOC100800632) coding protein psRNATarget
XM_003524528.3
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  ||||||||||||||||||=|=
targets:1069   UUGAGCAAGUUGAAGAUGGAG   1089

2.5 PREDICTED: Glycine max probable disease resistance protein At5g66900 (LOC100800632), transcript variant X1, mRNA probable disease resistance protein At5g66900(LOC100800632) coding protein psRNATarget
XM_003541532.3
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||||||||||||||=||||=
targets:190   CUGAGCAAGUUGAAGGUGAAG   210

2.5 PREDICTED: Glycine max putative disease resistance RPP13-like protein 1 (LOC100778337), transcript variant X1, mRNA putative disease resistance RPP13-like protein 1(LOC100778337) coding protein psRNATarget
XM_014771319.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  *||||*||||||||||*||||
targets:95   AUGAGGAAGUUGAAGAAGAAA   115

2.5 PREDICTED: Glycine max uncharacterized LOC106797198 (LOC106797198), mRNA uncharacterized LOC106797198(LOC106797198) coding protein psRNATarget
XM_006574753.2
ncRNA:21   AACUCG---UUCAACUUCUACUUU   1
  *|||||---|||||||||||||||
targets:1577   CUGAGCUUCAAGUUGAAGAUGAAA   1600

3.0 PREDICTED: Glycine max cleavage and polyadenylation specificity factor subunit 3-II (LOC100814997), mRNA cleavage and polyadenylation specificity factor subunit 3-II(LOC100814997) coding protein psRNATarget
XM_014772771.1
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  |||**|||||||||||||||*
targets:1154   UUGCUCAAGUUGAAGAUGAAC   1174

3.0 PREDICTED: Glycine max uncharacterized LOC100816119 (LOC100816119), transcript variant X3, mRNA uncharacterized LOC100816119(LOC100816119) coding protein psRNATarget
XM_006605447.2
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  |||**|||||||||||||||*
targets:1874   UUGCUCAAGUUGAAGAUGAAC   1894

3.0 PREDICTED: Glycine max uncharacterized LOC100816119 (LOC100816119), transcript variant X1, mRNA uncharacterized LOC100816119(LOC100816119) coding protein psRNATarget
XM_003556268.3
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  |||**|||||||||||||||*
targets:1886   UUGCUCAAGUUGAAGAUGAAC   1906

3.0 PREDICTED: Glycine max uncharacterized LOC100816119 (LOC100816119), transcript variant X2, mRNA uncharacterized LOC100816119(LOC100816119) coding protein psRNATarget
XM_003529382.3
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  |||**|||||||||||||||*
targets:2068   UUGCUCAAGUUGAAGAUGAAC   2088

3.0 PREDICTED: Glycine max uncharacterized LOC100796081 (LOC100796081), transcript variant X2, mRNA uncharacterized LOC100796081(LOC100796081) coding protein psRNATarget
XM_006583862.2
ncRNA:21   AACUCGUUCAACUUCUACUUU   1
  |||**|||||||||||||||*
targets:2078   UUGCUCAAGUUGAAGAUGAAC   2098

3.0 PREDICTED: Glycine max uncharacterized LOC100796081 (LOC100796081), transcript variant X1, mRNA uncharacterized LOC100796081(LOC100796081) coding protein psRNATarget

Reference

1 PMID:21751852
"Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome";
Radwan O, Liu Y, Clough SJ;
Mol Plant Microbe Interact. 24:958-972(2011).
2 PMID:24475082
"Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons";
Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ;
PLoS One. 9:e86153(2014).
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