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BaseInfo

ncRNA ID	gma-miR9729
Species	Glycine max
Class	miRNA
Genome position	chr16:29725206-29725333 [-]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	100 - GUAAUGAGUAGAAACAUUUAGAAG - 123
Stem-loop(if miRNA)	-U  A                     G       ----- GG   C    U    AU   A  UC G   UC AGUAAUGAGUAGAAACAUUUA AAGAGUU     C  UUA GCAA AAUA  GAU UC  U A   || ||||||||||||||||||||| |||||||     |  ||| |||| ||||  ||| ||  |   GG UUAUUACUCAUUUUUGUAAAU UUUUUAA     G  AGU CGUU UUAU  UUA AG  G A CU  A                     G       UUUAU AA   U    -    GU   -  UU A
Stem-loop sequence	UUCAAGUAAUGAGUAGAAACAUUUAGAAGAGUUCGGUUACGCAAUAAUAAUGAUAUCUCUGAAAGUUGAAUUUGUAUUUUGCUUGAAAGUAUUUAAUUUUUGUAAAUGUUUUUACUCAUUAUUAGGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014769018.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||=||||||||||||||| targets:1198   AGGAAGGGUGAAAGAAGCUAA   1218 Target Full Sequence	1.0	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC102668900), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC102668900)	coding protein	psRNATarget
XM_014769019.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||=||||||||||||||| targets:1199   AGGAAGGGUGAAAGAAGCUAA   1219 Target Full Sequence	1.0	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC102668900), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC102668900)	coding protein	psRNATarget
XM_006599565.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||=||||||||||||||| targets:1214   AGGAAGGGUGAAAGAAGCUAA   1234 Target Full Sequence	1.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62910-like (LOC100786237), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g62910-like(LOC100786237)	coding protein	psRNATarget
XM_006599423.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:871   AGGAAAGGUGAAAGAAGCCAA   891 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC100818504), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC100818504)	coding protein	psRNATarget
XM_006599424.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:871   AGGAAAGGUGAAAGAAGCCAA   891 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC100818504), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC100818504)	coding protein	psRNATarget
XM_006599319.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:992   AGGAAAGGUGAAAGAAGCCAA   1012 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC102663208), mRNA	pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like(LOC102663208)	coding protein	psRNATarget
XM_006586948.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:907   AGGAAAGGUGAAAGAAGCCAA   927 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100794739), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100794739)	coding protein	psRNATarget
XM_003530008.3	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:1022   AGGAAAGGUGAAAGAAGCCAA   1042 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100820602), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100820602)	coding protein	psRNATarget
XM_006586949.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:907   AGGAAAGGUGAAAGAAGCCAA   927 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100794739), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100794739)	coding protein	psRNATarget
XM_014762224.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:936   AGGAAAGGUGAAAGAAGCAAA   956 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619)	coding protein	psRNATarget
XM_014762226.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:870   AGGAAAGGUGAAAGAAGCAAA   890 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619)	coding protein	psRNATarget
XM_006599408.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:1007   AGGAAAGGUGAAAGAAGCCAA   1027 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100812093), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100812093)	coding protein	psRNATarget
XM_006599409.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:991   AGGAAAGGUGAAAGAAGCAAA   1011 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like (LOC100813712), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like(LOC100813712)	coding protein	psRNATarget
XM_014768490.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:1014   AGGAAAGGUGAAAGAAGCCAA   1034 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC100795807), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like(LOC100795807)	coding protein	psRNATarget
XM_003533264.3	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:1009   AGGAAAGGUGAAAGAAGCAAA   1029 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100814966), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100814966)	coding protein	psRNATarget
XM_014762225.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:936   AGGAAAGGUGAAAGAAGCAAA   956 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794619), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794619)	coding protein	psRNATarget
XM_014762227.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:957   AGGAAAGGUGAAAGAAGCAAA   977 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106794266), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106794266)	coding protein	psRNATarget
XM_014761713.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:969   AGGAAAGGUGAAAGAAGCAAA   989 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g63400-like (LOC102663951), mRNA	pentatricopeptide repeat-containing protein At1g63400-like(LOC102663951)	coding protein	psRNATarget
XM_006587401.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:885   AGGAAAGGUGAAAGAAGCAAA   905 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100781818), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100781818)	coding protein	psRNATarget
XM_006587408.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:872   AGGAAAGGUGAAAGAAGCAAA   892 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100786599), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100786599)	coding protein	psRNATarget
XM_006587402.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:872   AGGAAAGGUGAAAGAAGCAAA   892 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100780732), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100780732)	coding protein	psRNATarget
XM_014768489.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:885   AGGAAAGGUGAAAGAAGCCAA   905 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like (LOC100795807), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like(LOC100795807)	coding protein	psRNATarget
XM_014762223.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:879   AGGAAAGGUGAAAGAAGCAAA   899 Target Full Sequence	1.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC100782898), transcript variant X1, mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC100782898)	coding protein	psRNATarget
XM_014761712.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||||||||||||||*|| targets:1002   AGGAAAGGUGAAAGAAGCCAA   1022 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like (LOC100779660), mRNA	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like(LOC100779660)	coding protein	psRNATarget
XM_014768790.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||*|||*||||||||||||| targets:1181   AGGUAAGAUGAAAGAAGCUAA   1201 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100810667 (LOC100810667), mRNA	uncharacterized LOC100810667(LOC100810667)	coding protein	psRNATarget
XM_014768790.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||*|||*||||||||||||| targets:3500   AGGUAAGAUGAAAGAAGCUAA   3520 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100810667 (LOC100810667), mRNA	uncharacterized LOC100810667(LOC100810667)	coding protein	psRNATarget
XM_014769021.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||*|||*||||||||||||| targets:1038   AGGUAAGAUGAAAGAAGCUAA   1058 Target Full Sequence	2.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62910-like (LOC106796564), mRNA	pentatricopeptide repeat-containing protein At1g62910-like(LOC106796564)	coding protein	psRNATarget
XM_003549077.3	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||||*||||||*|||||| targets:1048   AGGAAAGAUGAAAGCAGCUAA   1068 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like (LOC100789435), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like(LOC100789435)	coding protein	psRNATarget
XM_014769013.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||||*||||||*|||||| targets:1048   AGGAAAGAUGAAAGCAGCUAA   1068 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like (LOC100789435), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like(LOC100789435)	coding protein	psRNATarget
XM_006587774.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||||*||||||||||*|| targets:1023   AGGAAAGCUGAAAGAAGCAAA   1043 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100778420), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100778420)	coding protein	psRNATarget
XM_006587773.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *||||||*||||||||||*|| targets:1023   AGGAAAGCUGAAAGAAGCAAA   1043 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC100778420), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC100778420)	coding protein	psRNATarget
XM_014769273.1	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   *|||||*|||||||||||*|| targets:1078   AGGAAAUGUGAAAGAAGCCAA   1098 Target Full Sequence	2.5	PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial (LOC106796589), mRNA	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial(LOC106796589)	coding protein	psRNATarget
XM_006602175.2	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   ***|||||*|||||||||||| targets:1410   ACAAAAGGAGAAAGAAGCUAA   1430 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102670551 (LOC102670551), mRNA	uncharacterized LOC102670551(LOC102670551)	coding protein	psRNATarget
XM_006602074.2	ncRNA:21   CCCU-UUCCACUUUCUUCGAUU   1   **||-=|||||||||||||||| targets:610   AAGAUGAGGUGAAAGAAGCUAA   631 Target Full Sequence	3.0	PREDICTED: Glycine max glutamic acid-rich protein-like (LOC100817467), transcript variant X2, mRNA	glutamic acid-rich protein-like(LOC100817467)	coding protein	psRNATarget
XM_006602073.2	ncRNA:21   CCCU-UUCCACUUUCUUCGAUU   1   **||-=|||||||||||||||| targets:487   AAGAUGAGGUGAAAGAAGCUAA   508 Target Full Sequence	3.0	PREDICTED: Glycine max glutamic acid-rich protein-like (LOC100817467), transcript variant X1, mRNA	glutamic acid-rich protein-like(LOC100817467)	coding protein	psRNATarget
XM_014770734.1	ncRNA:21   CCCU-UUCCACUUUCUUCGAUU   1   **||-=|||||||||||||||| targets:487   AAGAUGAGGUGAAAGAAGCUAA   508 Target Full Sequence	3.0	PREDICTED: Glycine max glutamic acid-rich protein-like (LOC100817467), transcript variant X3, mRNA	glutamic acid-rich protein-like(LOC100817467)	coding protein	psRNATarget
XM_003548481.3	ncRNA:21   CCCUUUCCACUUUCUUCGAUU   1   ||||||**||||||||||||= targets:2495   GGGAAAUAUGAAAGAAGCUAG   2515 Target Full Sequence	3.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g19440, chloroplastic (LOC100819570), mRNA	pentatricopeptide repeat-containing protein At4g19440, chloroplastic(LOC100819570)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).