Search result

BaseInfo

ncRNA ID gma-miR5668
Species Glycine max
Class miRNA
Genome position chr16:28980105-28980217 [+]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 83 - AGCAAUGGAAUUAUAGACUGC - 103
Stem-loop(if miRNA) GGA    -   G  AUG       C  UUU      --------         CU ACAUUU
   UGCU UUG AG   UUGUAAU CC   UUGUUG        GAAGUUUCU  C      U
   |||| ||| ||   ||||||| ||   ||||||        |||||||||  |
   ACGA AGC UC   GAUAUUA GG   AACGAC        CUUCGGAGA  G      C
UGA    C   G  --A       A  --U      UGGUAAAA         AC AAAGAA
Stem-loop sequence GGAUGCUUUGGAGAUGUUGUAAUCCCUUUUUGUUGGAAGUUUCUCUCACAUUUUCAAGAAAGCAAGAGGCUUCAAAAUGGUCAGCAAUGGAAUUAUAGACUGCGACAGCAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT096107.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:727   GCAGUCUAUAAUUCCAUUGCU   747

0.0 Soybean clone JCVI-FLGm-20K4 unknown mRNA NA coding protein psRNATarget
AF175395.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:685   GCAGUCUAUAAUUCCAUUGCU   705

0.0 Glycine max resistance protein MG23 mRNA, partial cds NA coding protein psRNATarget
FJ014878.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:685   GCAGUCUAUAAUUCCAUUGCU   705

0.0 Glycine max clone cw17 resistance protein mRNA, complete cds NA coding protein psRNATarget
XM_014768629.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:747   GCAGUCUAUAAUUCCAUUGCU   767

0.0 PREDICTED: Glycine max TMV resistance protein N (LOC100795233), mRNA TMV resistance protein N(LOC100795233) coding protein psRNATarget
XM_014768535.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:779   GCAGUCUAUAAUUCCAUUGCU   799

0.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X2, mRNA TMV resistance protein N-like(LOC100817950) coding protein psRNATarget
XM_006599306.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:766   GCAGUCUAUAAUUCCAUUGCU   786

0.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100793122), transcript variant X1, mRNA TMV resistance protein N-like(LOC100793122) coding protein psRNATarget
XM_014768640.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:733   GCAGUCUAUAAUUCCAUUGCU   753

0.0 PREDICTED: Glycine max protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like (LOC100794705), mRNA protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like(LOC100794705) coding protein psRNATarget
XM_003548835.3
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:816   GCAGUCUAUAAUUCCAUUGCU   836

0.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100798421), mRNA TMV resistance protein N-like(LOC100798421) coding protein psRNATarget
XM_014768534.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:779   GCAGUCUAUAAUUCCAUUGCU   799

0.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100817950), transcript variant X1, mRNA TMV resistance protein N-like(LOC100817950) coding protein psRNATarget
XM_006599301.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||||||||||||||||||
targets:844   GCAGUCUAUAAUUCCAUUGCU   864

0.0 PREDICTED: Glycine max protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 (LOC547562), mRNA protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1(LOC547562) coding protein psRNATarget
XM_006603943.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:254   GCAGUUUAUAAUUCCAUUGCU   274

1.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X3, mRNA TMV resistance protein N-like(LOC100784366) coding protein psRNATarget
XM_006603691.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:345   GCAGUUUAUAAUUCCAUUGCU   365

1.0 PREDICTED: Glycine max functional candidate resistance protein KR1 (KR1), transcript variant X1, mRNA functional candidate resistance protein KR1(KR1) coding protein psRNATarget
XM_006603941.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:964   GCAGUUUAUAAUUCCAUUGCU   984

1.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X2, mRNA TMV resistance protein N-like(LOC100784366) coding protein psRNATarget
AF327903.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:808   GCAGUUUAUAAUUCCAUUGCU   828

1.0 Glycine max functional candidate resistance protein KR1 (KR1) mRNA, complete cds NA coding protein psRNATarget
NM_001250837.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:808   GCAGUUUAUAAUUCCAUUGCU   828

1.0 Glycine max resistance protein KR1 (KR1), mRNA functional candidate resistance protein KR1(KR1) coding protein psRNATarget
XM_006603940.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||||=|||||||||||||||
targets:964   GCAGUUUAUAAUUCCAUUGCU   984

1.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100784366), transcript variant X1, mRNA TMV resistance protein N-like(LOC100784366) coding protein psRNATarget
XM_014768734.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||*|||||||||||||||||
targets:319   GCAAUCUAUAAUUCCAUUGCU   339

1.0 PREDICTED: Glycine max disease resistance protein RML1A-like (LOC102662798), mRNA disease resistance protein RML1A-like(LOC102662798) coding protein psRNATarget
XM_003553308.3
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  |||*|=|||||||||||||||
targets:836   GCAAUUUAUAAUUCCAUUGCU   856

2.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100792320), mRNA TMV resistance protein N-like(LOC100792320) coding protein psRNATarget
AF175394.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  ||=|||||||||||=||||||
targets:685   GCGGUCUAUAAUUCUAUUGCU   705

2.5 Glycine max resistance protein LM12 mRNA, partial cds NA coding protein psRNATarget
AK245668.1
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  ||=|||||||||||=||||||
targets:745   GCGGUCUAUAAUUCUAUUGCU   765

2.5 Glycine max cDNA, clone: GMFL01-37-C18 NA coding protein psRNATarget
XM_003547928.3
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  ||=|||||||||||=||||||
targets:842   GCGGUCUAUAAUUCUAUUGCU   862

2.5 PREDICTED: Glycine max TMV resistance protein N (LOC547561), mRNA TMV resistance protein N(LOC547561) coding protein psRNATarget
XM_006599308.2
ncRNA:21   CGUCAGAUAUUAAGGUAACGA   1
  ||=||||||||||||||||=|
targets:806   GCGGUCUAUAAUUCCAUUGUU   826

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100796826), mRNA TMV resistance protein N-like(LOC100796826) coding protein psRNATarget

Reference

1 PMID:21219599
"Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing";
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS;
BMC Plant Biol. 11:5(2011).
© 2017 OPP-ncRBASE. All rights reserved.