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BaseInfo

ncRNA ID	gma-miR5375
Species	Glycine max
Class	miRNA
Genome position	chr16:2916844-2917034 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	19 - ACUAUAGAAGUACUUGUGGAGC - 40
Stem-loop(if miRNA)	AG             C   U  AAC  UCC   -     UU   GCAGUUUCUCAGAAUCAAUAUUCUUAUG GUAUUUAGCAAAUUGAUUACUAUAGA  UACUUGUGGAGCU UUG GC   UC   UUU CCAUC  GGG                            A ||||||||||||||||||||||||||  ||||||||||||| ||| ||   ||   ||| |||||  |||                            U CAUAAAUCGUUUAAUUAAUGAUAUCU  AUGAACACCUCGA AGU UG   AG   UGU CAAAA  ACG                            G                           AA             U   U  --G  ---   U     --   UCAAUGUUUUUGACACUUAAGUCUAAGG
Stem-loop sequence	GUAUUUAGCAAAUUGAUUACUAUAGAAGUACUUGUGGAGCUCUUGUGCAACUCUCCUUUCCAUCUUGGGGCAGUUUCUCAGAAUCAAUAUUCUUAUGAUGGGAAUCUGAAUUCACAGUUUUUGUAACUGCAAAAACUUGUGAGGUUUGAUAGCUCCACAAGUAAAUCUAUAGUAAUUAAUUUGCUAAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006582420.1	ncRNA:22   CGAGGUGUUCAUGAAGAUAUCA   1   |*|***|||||||||||||||| targets:600   GAUGGUCAAGUACUUCUAUAGU   621 Target Full Sequence	3.0	PREDICTED: Glycine max probable glycosyltransferase At5g25310 (LOC102659997), mRNA	probable glycosyltransferase At5g25310(LOC102659997)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).