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BaseInfo

ncRNA ID	gma-miR159c
Species	Glycine max
Class	miRNA
Genome position	chr16:2804526-2804710 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	12 - AUUGGAGUGAAGGGAGCUCCG - 32
Stem-loop(if miRNA)	---A  C  G            A        GU        AG   C     A    UG  GCU        GUU    U   -A    G  AAG     CC AA UUGGAGCUCUCU CACUCCAA  CUGAAGGA  UGA GGUAG CCCU  CU   AAUUCAUG   ACCU UGG  UUCA AU   G     || || |||||||||||| ||||||||  ||||||||  ||| ||||| ||||  ||   ||||||||   |||| |||  |||| ||     GG UU AGCCUCGAGGGA GUGAGGUU  GAUUUUCU  GUU CCAUC GGGG  GA   UUAAGUAC   UGGG ACU  AAGU UA   A UUCC  A  A            A        AU        -A   -     -    CA  AGU        GUC    U   GA    G  CGA
Stem-loop sequence	ACCCAAGUUGGAGCUCUCUACACUCCAAGUCUGAAGGAAGUGACGGUAGACCCUUGCUGCUAAUUCAUGGUUACCUUUGGAUUCAGAUAAGGAAGCAUGUGAAAGUCAUGGGUCUGCAUGAAUUUGAAGACGGGGCUACCUUGAUCUUUUAGUAUUGGAGUGAAGGGAGCUCCGAAUUAGGCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006597998.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1951   UGGAGCUCCCUUCACUCCAAU   1971 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
XM_006594288.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1822   UGGAGCUCCCUUCACUCCAAU   1842 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006594287.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1423   UGGAGCUCCCUUCACUCCAAU   1443 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
NM_001317612.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1401   UGGAGCUCCCUUCACUCCAAU   1421 Target Full Sequence	0.0	Glycine max transcription factor GAMYB-like (LOC100810415), mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
KC525897.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1401   UGGAGCUCCCUUCACUCCAAU   1421 Target Full Sequence	0.0	Glycine max GAMBY1-like family protein (GAMYB1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_006594286.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1369   UGGAGCUCCCUUCACUCCAAU   1389 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
XM_006594289.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1363   UGGAGCUCCCUUCACUCCAAU   1383 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC100810415)	coding protein	psRNATarget
EU328398.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1365   UGGAGCUCCCUUCACUCCAAU   1385 Target Full Sequence	0.0	Glycine max GAMYB protein (GAMYB) mRNA, complete cds	NA	coding protein	psRNATarget
XM_006597995.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1310   UGGAGCUCCCUUCACUCCAAU   1330 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
XM_014767378.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1304   UGGAGCUCCCUUCACUCCAAU   1324 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100785877)	coding protein	psRNATarget
XM_014773037.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1612   UGGAGCUCCCUUCACUCCAAU   1632 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100818609)	coding protein	psRNATarget
XM_006605565.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1514   UGGAGCUCCCUUCACUCCAAU   1534 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100818609)	coding protein	psRNATarget
XM_006593563.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1405   UGGAGCUCCCUUCACUCCAAU   1425 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_014765331.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1137   UGGAGCUCCCUUCACUCCAAU   1157 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X3, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_006593564.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1097   UGGAGCUCCCUUCACUCCAAU   1117 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X4, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_003543777.3	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   =|||||||||||||||||||| targets:1082   UGGAGCUCCCUUCACUCCAAU   1102 Target Full Sequence	0.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100800658)	coding protein	psRNATarget
XM_006578333.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   |*||||||||||||||||||* targets:1324   CAGAGCUCCCUUCACUCCAAA   1344 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_003523865.3	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   |*||||||||||||||||||* targets:1324   CAGAGCUCCCUUCACUCCAAA   1344 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100792349)	coding protein	psRNATarget
XM_006582324.2	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   |*||||||||||||||||||* targets:1261   CAGAGCUCCCUUCACUCCAAA   1281 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
XM_003526306.3	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   |*||||||||||||||||||* targets:1261   CAGAGCUCCCUUCACUCCAAA   1281 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA	transcription factor GAMYB-like(LOC100805804)	coding protein	psRNATarget
BT098668.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   *|||||||||||||*|||||* targets:280   AGGAGCUCCCUUCAGUCCAAG   300 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12F22 unknown mRNA	NA	coding protein	psRNATarget
JB170935.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   *|||||||||||||*|||||* targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2559767	NA	coding protein	psRNATarget
HI410474.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   *|||||||||||||*|||||* targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242604.1	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   *|||||||||||||*|||||* targets:13   AGGAGCUCCCUUCAGUCCAAG   33 Target Full Sequence	2.5	Sequence 8599 from Patent EP2985353	NA	coding protein	psRNATarget
XM_003528179.3	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   ***||||||||*||||||||| targets:1172   ACAAGCUCCCUCCACUCCAAU   1192 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TCP5-like (LOC100804574), mRNA	transcription factor TCP5-like(LOC100804574)	coding protein	psRNATarget
XM_003522243.3	ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1   ***||||||||*||||||||| targets:986   ACAAGCUCCCUCCACUCCAAU   1006 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor TCP5-like (LOC100788984), mRNA	transcription factor TCP5-like(LOC100788984)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).