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BaseInfo

ncRNA ID gma-miR159f-3p
Species Glycine max
Class miRNA
Genome position chr16:2794128-2794307 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 7 - AUUGGAGUGAAGGGAGCUCCA - 27
Stem-loop(if miRNA)     AAG            G        GU UG     A  UGAU       C  UG  G    U     G U   UC    C   U   AA
ACCC   UUGGAGUUCCCU CACUCCAA  C  AAAGG UA    GGUAAAC UC  CU CUAG UCAUG A ACC  UGGC UCG AAC  C
||||   |||||||||||| ||||||||  |  ||||| ||    ||||||| ||  || |||| ||||| | |||  |||| ||| |||  A
UGGG   GACCUCGAGGGA GUGAGGUU  G  UUUCC GU    CCAUUUG AG  GA GGUC AGUAC U UGG  ACUG AGC UUG  U
    --A            A        AU GU     A  ---U       -  UA  G    C     G U   GA    A   -   CG
Stem-loop sequence ACCCAAGUUGGAGUUCCCUGCACUCCAAGUCUGAAAGGAUAUGAUGGUAAACCUCUGCUGCUAGUUCAUGGAUACCUCUGGCCUCGUAACAACAUGCGUUCGAAGUCAAGGGUUUGCAUGACCUGGGAGAUGAGUUUACCUUGACCUUUUGGUAUUGGAGUGAAGGGAGCUCCAGAGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543777.3
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1082   UGGAGCUCCCUUCACUCCAAU   1102

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006593564.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1097   UGGAGCUCCCUUCACUCCAAU   1117

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X4, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_014765331.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1137   UGGAGCUCCCUUCACUCCAAU   1157

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006593563.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1405   UGGAGCUCCCUUCACUCCAAU   1425

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100800658), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100800658) coding protein psRNATarget
XM_006605565.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1514   UGGAGCUCCCUUCACUCCAAU   1534

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100818609) coding protein psRNATarget
XM_014767378.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1304   UGGAGCUCCCUUCACUCCAAU   1324

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
XM_014773037.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1612   UGGAGCUCCCUUCACUCCAAU   1632

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100818609), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100818609) coding protein psRNATarget
XM_006597995.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1310   UGGAGCUCCCUUCACUCCAAU   1330

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
EU328398.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1365   UGGAGCUCCCUUCACUCCAAU   1385

0.0 Glycine max GAMYB protein (GAMYB) mRNA, complete cds NA coding protein psRNATarget
XM_006594289.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1363   UGGAGCUCCCUUCACUCCAAU   1383

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X4, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594286.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1369   UGGAGCUCCCUUCACUCCAAU   1389

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
KC525897.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1401   UGGAGCUCCCUUCACUCCAAU   1421

0.0 Glycine max GAMBY1-like family protein (GAMYB1) mRNA, complete cds NA coding protein psRNATarget
NM_001317612.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1401   UGGAGCUCCCUUCACUCCAAU   1421

0.0 Glycine max transcription factor GAMYB-like (LOC100810415), mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594287.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1423   UGGAGCUCCCUUCACUCCAAU   1443

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006594288.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1822   UGGAGCUCCCUUCACUCCAAU   1842

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100810415), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100810415) coding protein psRNATarget
XM_006597998.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  |||||||||||||||||||||
targets:1951   UGGAGCUCCCUUCACUCCAAU   1971

0.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100785877), transcript variant X3, mRNA transcription factor GAMYB-like(LOC100785877) coding protein psRNATarget
XM_003526306.3
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  **||||||||||||||||||*
targets:1261   CAGAGCUCCCUUCACUCCAAA   1281

1.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100805804) coding protein psRNATarget
XM_006582324.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  **||||||||||||||||||*
targets:1261   CAGAGCUCCCUUCACUCCAAA   1281

1.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100805804), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100805804) coding protein psRNATarget
XM_003523865.3
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  **||||||||||||||||||*
targets:1324   CAGAGCUCCCUUCACUCCAAA   1344

1.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X2, mRNA transcription factor GAMYB-like(LOC100792349) coding protein psRNATarget
XM_006578333.2
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  **||||||||||||||||||*
targets:1324   CAGAGCUCCCUUCACUCCAAA   1344

1.0 PREDICTED: Glycine max transcription factor GAMYB-like (LOC100792349), transcript variant X1, mRNA transcription factor GAMYB-like(LOC100792349) coding protein psRNATarget
LQ242604.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  *|||||||||||||*|||||*
targets:13   AGGAGCUCCCUUCAGUCCAAG   33

2.5 Sequence 8599 from Patent EP2985353 NA coding protein psRNATarget
JB170935.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  *|||||||||||||*|||||*
targets:13   AGGAGCUCCCUUCAGUCCAAG   33

2.5 Sequence 8599 from Patent EP2559767 NA coding protein psRNATarget
HI410474.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  *|||||||||||||*|||||*
targets:13   AGGAGCUCCCUUCAGUCCAAG   33

2.5 Sequence 8599 from Patent EP2074227 NA coding protein psRNATarget
BT098668.1
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  *|||||||||||||*|||||*
targets:280   AGGAGCUCCCUUCAGUCCAAG   300

2.5 Soybean clone JCVI-FLGm-12F22 unknown mRNA NA coding protein psRNATarget
XM_003522243.3
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  ***||||||||*|||||||||
targets:986   ACAAGCUCCCUCCACUCCAAU   1006

2.5 PREDICTED: Glycine max transcription factor TCP5-like (LOC100788984), mRNA transcription factor TCP5-like(LOC100788984) coding protein psRNATarget
XM_003528179.3
ncRNA:21   ACCUCGAGGGAAGUGAGGUUA   1
  ***||||||||*|||||||||
targets:1172   ACAAGCUCCCUCCACUCCAAU   1192

2.5 PREDICTED: Glycine max transcription factor TCP5-like (LOC100804574), mRNA transcription factor TCP5-like(LOC100804574) coding protein psRNATarget

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
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