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BaseInfo

ncRNA ID	ath-miR834
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:2641426-2641674 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	52 - UGGUAGCAGUAGCGGUGGUAA - 72
Stem-loop(if miRNA)	-UACAACAUA  U     G U     A   UUUUUUUCA  GACAGCCAAAAUCACCACCGCUUCUGCUACGAACAUGUUAAGCCAUCCUUUUAACCGUUGCUGCCACCACUAUUACGGCCAUCACAA           UG UACCA U GUGCU UCA         GC                                                                                       G           || ||||| | ||||| |||         ||           AC GUGGU G UACGA GGU         AC                                                                                       A ACUGACGAAG  U     G U     A   --------A  GGCGAGUGCGAUAGCCGUAAUGGUGGCGAUGACGAUGGUUGCACAGUAUGGUCGACGAUGAUAGUGGCAAAGGUGAACGUACUUAAA
Stem-loop sequence	UACAACAUAUGUUACCAGUUGUGCUAUCAUUUUUUUCAGCGACAGCCAAAAUCACCACCGCUUCUGCUACGAACAUGUUAAGCCAUCCUUUUAACCGUUGCUGCCACCACUAUUACGGCCAUCACAAGAAAAUUCAUGCAAGUGGAAACGGUGAUAGUAGCAGCUGGUAUGACACGUUGGUAGCAGUAGCGGUGGUAAUGCCGAUAGCGUGAGCGGCAAUGGAAGCAUUGGUGGUGUCAGAAGCAGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001340279.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   *|||==||||||||||||||| targets:1535   CUACUGCCGCUACUGCUACCA   1555 Target Full Sequence	2.0	Arabidopsis thaliana COP1-interacting protein 4.1 (CIP4.1), mRNA	COP1-interacting protein 4.1(CIP4.1)	coding protein	psRNATarget
NM_001340280.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   *|||==||||||||||||||| targets:1535   CUACUGCCGCUACUGCUACCA   1555 Target Full Sequence	2.0	Arabidopsis thaliana COP1-interacting protein 4.1 (CIP4.1), mRNA	COP1-interacting protein 4.1(CIP4.1)	coding protein	psRNATarget
NM_116320.6	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   *|||==||||||||||||||| targets:1535   CUACUGCCGCUACUGCUACCA   1555 Target Full Sequence	2.0	Arabidopsis thaliana COP1-interacting protein 4.1 (CIP4.1), mRNA	COP1-interacting protein 4.1(CIP4.1)	coding protein	psRNATarget
NM_001340281.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   *|||==||||||||||||||| targets:1531   CUACUGCCGCUACUGCUACCA   1551 Target Full Sequence	2.0	Arabidopsis thaliana COP1-interacting protein 4.1 (CIP4.1), mRNA	COP1-interacting protein 4.1(CIP4.1)	coding protein	psRNATarget
NM_115102.3	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   **|||=||||||||||*|||| targets:244   ACACCGCCGCUACUGCAACCA   264 Target Full Sequence	2.5	Arabidopsis thaliana outer envelope membrane protein 7 (OEP7), mRNA	outer envelope membrane protein 7(OEP7)	coding protein	psRNATarget
AK175812.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   **|||=||||||||||*|||| targets:198   ACACCGCCGCUACUGCAACCA   218 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for outer envelope membrane protein-like protein, complete cds, clone: RAFL22-41-D08	NA	coding protein	psRNATarget
AK175275.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   **|||=||||||||||*|||| targets:186   ACACCGCCGCUACUGCAACCA   206 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for outer envelope membrane protein-like protein, complete cds, clone: RAFL21-71-D17	NA	coding protein	psRNATarget
BT010511.1	ncRNA:21   AAUGGUGGCGAUGACGAUGGU   1   **|||=||||||||||*|||| targets:155   ACACCGCCGCUACUGCAACCA   175 Target Full Sequence	2.5	Arabidopsis thaliana At3g52420 gene, complete cds	NA	coding protein	psRNATarget
NM_120666.3	ncRNA:21   AAUGG-UGGCGAUGACGAUGGU   1   **|||-|||||||||||||||= targets:341   AAACCUACCGCUACUGCUACCG   362 Target Full Sequence	3.0	Arabidopsis thaliana replication factor C subunit, putative (DUF620) mRNA	replication factor C subunit, putative (DUF620)(AT5G05840)	coding protein	psRNATarget
AY735671.1	ncRNA:21   AAUGG-UGGCGAUGACGAUGGU   1   **|||-|||||||||||||||= targets:341   AAACCUACCGCUACUGCUACCG   362 Target Full Sequence	3.0	Arabidopsis thaliana chromosome 5 hypothetical protein AT5G05840 mRNA, complete cds, alternatively spliced	NA	coding protein	psRNATarget
AY924834.1	ncRNA:21   AAUGG-UGGCGAUGACGAUGGU   1   **|||-|||||||||||||||= targets:268   AAACCUACCGCUACUGCUACCG   289 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein (At5g05840) mRNA, complete cds	NA	coding protein	psRNATarget
AY735672.1	ncRNA:21   AAUGG-UGGCGAUGACGAUGGU   1   **|||-|||||||||||||||= targets:341   AAACCUACCGCUACUGCUACCG   362 Target Full Sequence	3.0	Arabidopsis thaliana chromosome 5 hypothetical protein AT5G05840 mRNA, complete cds, alternatively spliced	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).