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BaseInfo

ncRNA ID	gma-miR166a-3p
Species	Glycine max
Class	miRNA
Genome position	chr16:1912570-1912715 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - UCGGACCAGGCUUCAUUCCCC - 40
Stem-loop(if miRNA)	-AC      UU   CUU   A        UU      CU   G   C  -UCUUCA        --UU      A    GGAAGC  UGU   UUG GGGGAAUG  GUCUGG  CGA GAC CU       UCUUGAUC    GUGUAG C    ||||||  |||   ||| ||||||||  ||||||  ||| ||| ||       ||||||||    ||||||    CCUUCG  AUA   AAC CCCCUUAC  CGGACC  GCU UUG GA       GGAACUGG    CGUAUC U AAA      -U   -UU   C        UU      AG   G   U  UACAUAA        UGUU      A
Stem-loop sequence	ACGGAAGCUUUGUCUUUUGAGGGGAAUGUUGUCUGGCUCGAGGACCCUUCUUCAUCUUGAUCUUGUGUAGACUACUAUGCUUGUGGUCAAGGAAUACAUAGUGUUGUCGGACCAGGCUUCAUUCCCCCCAAUUAUAUGCUUCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014779133.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:338   CUGGAAUGAAGCCUGGUCCGG   358 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X4, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_014779132.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:498   CUGGAAUGAAGCCUGGUCCGG   518 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X3, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_014777646.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:627   CUGGAAUGAAGCCUGGUCCGG   647 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_014777647.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:628   CUGGAAUGAAGCCUGGUCCGG   648 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X3, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_003530064.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:650   CUGGAAUGAAGCCUGGUCCGG   670 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100775524)	coding protein	psRNATarget
XM_003531605.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:788   CUGGAAUGAAGCCUGGUCCGG   808 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_006585513.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:791   CUGGAAUGAAGCCUGGUCCGG   811 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100800697)	coding protein	psRNATarget
XM_003530061.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:904   CUGGAAUGAAGCCUGGUCCGG   924 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100819365), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100819365)	coding protein	psRNATarget
XM_003531604.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:977   CUGGAAUGAAGCCUGGUCCGG   997 Target Full Sequence	1.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15 (LOC100800165), mRNA	homeobox-leucine zipper protein ATHB-15(LOC100800165)	coding protein	psRNATarget
XM_003526448.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:575   CUGGGAUGAAGCCUGGUCCGG   595 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100797291), mRNA	homeobox-leucine zipper protein ATHB-15-like(LOC100797291)	coding protein	psRNATarget
XM_003524945.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:590   UUGGGAUGAAGCCUGGUCCGG   610 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100806322), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100806322)	coding protein	psRNATarget
XM_003522668.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:919   CUGGGAUGAAGCCUGGUCCGG   939 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-8-like (LOC100815727), mRNA	homeobox-leucine zipper protein ATHB-8-like(LOC100815727)	coding protein	psRNATarget
XM_003546207.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:929   UUGGGAUGAAGCCUGGUCCGG   949 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807428), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100807428)	coding protein	psRNATarget
XM_003532740.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1065   UUGGGAUGAAGCCUGGUCCGG   1085 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807637), mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100807637)	coding protein	psRNATarget
XM_003535030.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1180   UUGGGAUGAAGCCUGGUCCGG   1200 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X2, mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100779499)	coding protein	psRNATarget
XM_014761858.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1186   UUGGGAUGAAGCCUGGUCCGG   1206 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X1, mRNA	homeobox-leucine zipper protein ATHB-14-like(LOC100779499)	coding protein	psRNATarget
XM_003538102.3	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1265   CUGGGAUGAAGCCUGGUCCGG   1285 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100804870), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC100804870)	coding protein	psRNATarget
XM_006592195.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1291   CUGGGAUGAAGCCUGGUCCGG   1311 Target Full Sequence	2.0	PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100813804), mRNA	homeobox-leucine zipper protein REVOLUTA-like(LOC100813804)	coding protein	psRNATarget

Reference

1	PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008).
2	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).