Search result

BaseInfo

ncRNA ID	gma-miR9736
Species	Glycine max
Class	miRNA
Genome position	chr15:45355285-45355403 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	94 - UGAAAGACAAACAAAGGUGGG - 114
Stem-loop(if miRNA)	AAG  C             A         CC   U         --------------------    U    GU CCCACCUUUGUUU UCUUUCAUC  UCA UAUCCUCAA                    GUUG C    || ||||||||||||| |||||||||  ||| |||||||||                    ||||    CA GGGUGGAAACAAA AGAAAGUAG  GGU AUAGGAGUU                    UAAC C -AA  A             C         UA   U         UUCCCACUUUCUAUUCGUAC    A
Stem-loop sequence	AAGGUCCCCACCUUUGUUUAUCUUUCAUCCCUCAUUAUCCUCAAGUUGUCCACAAUCAUGCUUAUCUUUCACCCUUUUGAGGAUAUUGGAUGAUGAAAGACAAACAAAGGUGGGAACAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014769657.1	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   ||||||||||||||||||||| targets:501   CCCACCUUUGUUUGUCUUUCA   521 Target Full Sequence	0.0	PREDICTED: Glycine max F-box/LRR-repeat protein At3g58900-like (LOC102667990), mRNA	F-box/LRR-repeat protein At3g58900-like(LOC102667990)	coding protein	psRNATarget
XM_006573639.2	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   **||=||||||||*||||||| targets:582   GGCAUCUUUGUUUCUCUUUCA   602 Target Full Sequence	2.5	PREDICTED: Glycine max probable BOI-related E3 ubiquitin-protein ligase 2 (LOC100797727), mRNA	probable BOI-related E3 ubiquitin-protein ligase 2(LOC100797727)	coding protein	psRNATarget
XM_014762446.1	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   *|||*||||*||||||||||| targets:3284   ACCAGCUUUUUUUGUCUUUCA   3304 Target Full Sequence	2.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC100809775), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g06840(LOC100809775)	coding protein	psRNATarget
XM_006587838.2	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   *|||*||||*||||||||||| targets:3271   ACCAGCUUUUUUUGUCUUUCA   3291 Target Full Sequence	2.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC100809775), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g06840(LOC100809775)	coding protein	psRNATarget
XM_003533603.3	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   *|||*||||*||||||||||| targets:3185   ACCAGCUUUUUUUGUCUUUCA   3205 Target Full Sequence	2.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC100809775), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g06840(LOC100809775)	coding protein	psRNATarget
XM_006587839.2	ncRNA:21   GGGUGGAAACAAACAGAAAGU   1   *|||*||||*||||||||||| targets:3182   ACCAGCUUUUUUUGUCUUUCA   3202 Target Full Sequence	2.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g06840 (LOC100809775), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g06840(LOC100809775)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).