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BaseInfo

ncRNA ID	gma-miR5376
Species	Glycine max
Class	miRNA
Genome position	chr15:16900161-16900327 [+]
Reference genome	v1.0
Source	miRBase
Length	22
Mature sequence(if miRNA)	1 - UGAAGAUUUGAAGAAUUUGGGA - 22
Stem-loop(if miRNA)	U                          A -  C   A                                  A    AUCUUCA  GAAGAUUUGAAGAAUUUGGGAGAAGG C GC GUC AGGUCGAGGGUUUCGUGACUACAGCUUCUGAAGC CGUC       C  |||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||| ||||  CUUCUAAACUUCUUAAACCCUCUUCC G CG CAG UCCAGCUCUCAAAGCACUGAUGUUGAAGACUUUG GCAG       A A                          C A  C   A                                  C    AAUAAAU
Stem-loop sequence	UGAAGAUUUGAAGAAUUUGGGAGAAGGACGCCGUCAAGGUCGAGGGUUUCGUGACUACAGCUUCUGAAGCACGUCAUCUUCACAUAAAUAAGACGCGUUUCAGAAGUUGUAGUCACGAAACUCUCGACCUAGACCGCAGCCCUUCUCCCAAAUUCUUCAAAUCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF502080.1	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   *|||||*||||||||||||||* targets:353   ACCCAAUUUCUUCAAAUCUUCC   374 Target Full Sequence	2.0	Glycine max resistance protein KR4 mRNA, complete cds	NA	coding protein	psRNATarget
XM_006598038.2	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   *|||||*||||||||||||||* targets:527   ACCCAAUUUCUUCAAAUCUUCC   548 Target Full Sequence	2.0	PREDICTED: Glycine max putative disease resistance protein At3g14460 (LOC100792404), transcript variant X2, mRNA	putative disease resistance protein At3g14460(LOC100792404)	coding protein	psRNATarget
XM_003545782.3	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   *|||||*||||||||||||||* targets:529   ACCCAAUUUCUUCAAAUCUUCC   550 Target Full Sequence	2.0	PREDICTED: Glycine max putative disease resistance protein At3g14460 (LOC100792404), transcript variant X1, mRNA	putative disease resistance protein At3g14460(LOC100792404)	coding protein	psRNATarget
XM_014768060.1	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   *|||||*||||||||||||||* targets:573   ACCCAAUUUCUUCAAAUCUUCC   594 Target Full Sequence	2.0	PREDICTED: Glycine max resistance protein KR4 (LOC547639), mRNA	resistance protein KR4(LOC547639)	coding protein	psRNATarget
XM_003547702.3	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   *|||*||||||||||*|||||| targets:429   CCCCCAAUUCUUCAAUUCUUCA   450 Target Full Sequence	2.5	PREDICTED: Glycine max probable GTP diphosphokinase RSH2, chloroplastic (LOC100787301), mRNA	probable GTP diphosphokinase RSH2, chloroplastic(LOC100787301)	coding protein	psRNATarget
XM_003533906.3	ncRNA:22   AGGGUUUAAGAAGUUUAGAAGU   1   |=*|*||||||||||||=|||| targets:646   UUGCUAAUUCUUCAAAUUUUCA   667 Target Full Sequence	2.5	PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 23 (LOC100798789), mRNA	mediator of RNA polymerase II transcription subunit 23(LOC100798789)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).