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BaseInfo

ncRNA ID	gma-miR169e
Species	Glycine max
Class	miRNA
Genome position	chr15:14194107-14194226 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	34 - AGCCAAGGAUGACUUGCCGG - 53
Stem-loop(if miRNA)	C    A A  U         GCUUU     C       A     C    UAAUU GUCUUG AUGA G GG AGAGAGAGU     UGAGC AAGGAUG CUUGC GGCG     A |||||| |||| | || |||||||||     ||||| ||||||| ||||| ||||     C CAGAAU UACU C CU UUUCUCUCG     ACUUG UUCCUAC GAGCG CCGU     G       A    - A  -         UAUUC     -       A     A    UAUGG
Stem-loop sequence	GUCUUGCAUGAAGAGGUAGAGAGAGUGCUUUUGAGCCAAGGAUGACUUGCCGGCGUAAUUACGGGUAUUGCCAGCGAGACAUCCUUGUUCACUUAUGCUCUCUUUUCACUCAUAUAAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170945.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =||||||||||||=|||||| targets:154   UCGGCAAGUCAUCUUUGGCU   173 Target Full Sequence	1.5	Sequence 8609 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242614.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =||||||||||||=|||||| targets:154   UCGGCAAGUCAUCUUUGGCU   173 Target Full Sequence	1.5	Sequence 8609 from Patent EP2985353	NA	coding protein	psRNATarget
HI410484.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =||||||||||||=|||||| targets:154   UCGGCAAGUCAUCUUUGGCU   173 Target Full Sequence	1.5	Sequence 8609 from Patent EP2074227	NA	coding protein	psRNATarget
XM_006597141.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   ==||*||||||||||||||| targets:1128   UUGGGAAGUCAUCCUUGGCU   1147 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597140.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   ==||*||||||||||||||| targets:1192   UUGGGAAGUCAUCCUUGGCU   1211 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597138.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   ==||*||||||||||||||| targets:1206   UUGGGAAGUCAUCCUUGGCU   1225 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_006597137.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   ==||*||||||||||||||| targets:1209   UUGGGAAGUCAUCCUUGGCU   1228 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_014767375.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   ==||*||||||||||||||| targets:1237   UUGGGAAGUCAUCCUUGGCU   1256 Target Full Sequence	2.0	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100803893), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100803893)	coding protein	psRNATarget
XM_014765430.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:745   CUGGCAAAUCAUCCUUGGCU   764 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
NM_001253093.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:882   CUGGCAAAUCAUCCUUGGCU   901 Target Full Sequence	2.5	Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
BT096576.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:884   CUGGCAAAUCAUCCUUGGCU   903 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-15L7 unknown mRNA	NA	coding protein	psRNATarget
AK245196.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:903   CUGGCAAAUCAUCCUUGGCU   922 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-23-I01	NA	coding protein	psRNATarget
XM_014765431.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:912   CUGGCAAAUCAUCCUUGGCU   931 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X9, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765426.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:918   CUGGCAAAUCAUCCUUGGCU   937 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765428.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:978   CUGGCAAAUCAUCCUUGGCU   997 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769305.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1020   CUGGCAAAUCAUCCUUGGCU   1039 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_003542302.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1039   CUGGCAAAUCAUCCUUGGCU   1058 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769304.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1080   CUGGCAAAUCAUCCUUGGCU   1099 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014769303.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1087   CUGGCAAAUCAUCCUUGGCU   1106 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014765429.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1056   CUGGCAAAUCAUCCUUGGCU   1075 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542304.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1079   CUGGCAAAUCAUCCUUGGCU   1098 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542303.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1135   CUGGCAAAUCAUCCUUGGCU   1154 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765427.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1154   CUGGCAAAUCAUCCUUGGCU   1173 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_006600097.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |=|||||*|||||||||||| targets:1244   CUGGCAAAUCAUCCUUGGCU   1263 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014761973.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |*|||||*|||||||||||| targets:927   CAGGCAAAUCAUCCUUGGCU   946 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget
XM_003533732.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   |*|||||*|||||||||||| targets:1047   CAGGCAAAUCAUCCUUGGCU   1066 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget
XM_014763055.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1298   UAGGCAACUCAUCCUUGGCU   1317 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006604597.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1309   UAGGCAACUCAUCCUUGGCU   1328 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771397.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1320   UAGGCAACUCAUCCUUGGCU   1339 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604599.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1352   UAGGCAACUCAUCCUUGGCU   1371 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604598.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1357   UAGGCAACUCAUCCUUGGCU   1376 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014771399.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1365   UAGGCAACUCAUCCUUGGCU   1384 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604596.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1407   UAGGCAACUCAUCCUUGGCU   1426 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_006604595.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1419   UAGGCAACUCAUCCUUGGCU   1438 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100815382), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100815382)	coding protein	psRNATarget
XM_014768398.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1439   UAGGCAACUCAUCCUUGGCU   1458 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X9, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768383.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1454   UAGGCAACUCAUCCUUGGCU   1473 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_003521452.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   **|||||*|||||||||||| targets:1458   AAGGCAACUCAUCCUUGGCU   1477 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_006575219.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1475   UAGGCAACUCAUCCUUGGCU   1494 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763058.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1483   UAGGCAACUCAUCCUUGGCU   1502 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006575221.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1478   UAGGCAACUCAUCCUUGGCU   1497 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768388.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1481   UAGGCAACUCAUCCUUGGCU   1500 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763053.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1492   UAGGCAACUCAUCCUUGGCU   1511 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_014768399.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1490   UAGGCAACUCAUCCUUGGCU   1509 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X10, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_006575218.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1499   UAGGCAACUCAUCCUUGGCU   1518 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_003521453.3	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   **|||||*|||||||||||| targets:1504   AAGGCAACUCAUCCUUGGCU   1523 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_014768385.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1505   UAGGCAACUCAUCCUUGGCU   1524 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014763056.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1517   UAGGCAACUCAUCCUUGGCU   1536 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_006575220.2	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1516   UAGGCAACUCAUCCUUGGCU   1535 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014768393.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1519   UAGGCAACUCAUCCUUGGCU   1538 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100808195), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100808195)	coding protein	psRNATarget
XM_014773924.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   **|||||*|||||||||||| targets:1523   AAGGCAACUCAUCCUUGGCU   1542 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10 (LOC100527677), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10(LOC100527677)	coding protein	psRNATarget
XM_014763059.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1544   UAGGCAACUCAUCCUUGGCU   1563 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_014763054.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1554   UAGGCAACUCAUCCUUGGCU   1573 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget
XM_014763057.1	ncRNA:20   GGCCGUUCAGUAGGAACCGA   1   =*|||||*|||||||||||| targets:1578   UAGGCAACUCAUCCUUGGCU   1597 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-10-like (LOC100794755), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-10-like(LOC100794755)	coding protein	psRNATarget

Reference

1	PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010).