| ncRNA ID | ath-miR162a-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:2634905-2635044 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 32 - UCGAUAAACCUCUGCAUCCAG - 52 |
| Stem-loop(if miRNA) |
U UG - - - UG ----U G C C C C GAAC U AGU G AAGAA GA G AGAG CGCUGGA GCAG GGUU AUCGAUCU UUC UGU ACAU A ||| | ||||| || | |||| ||||||| |||| |||| |||||||| ||| ||| |||| A UCA U UUCUU CU U UCUC GCGACCU CGUC CCAA UAGCUAGA AAG ACG UGUA A U GU A U A GU CGUUU A U A U U AAAA A |
| Stem-loop sequence | UAGUUGGAAGAAGAGUGAGAGUCGCUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGUGAACACAUUAAAAAUGUAAAAGCAUGAAUAGAUCGAUAAACCUCUGCAUCCAGCGUUUGCCUCUUGUAUCUUUCUUAUUGACUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF187317.1 |
|
3.0 | Arabidopsis thaliana CAF protein (CAF) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| AF292940.1 |
|
3.0 | Arabidopsis thaliana short integuments 1 (SIN1) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_099986.4 |
|
3.0 | Arabidopsis thaliana dicer-like 1 (DCL1), mRNA | dicer-like 1(DCL1) | coding protein | psRNATarget |
| 1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
| 2 | PMID:12202040
"Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002). |
| 3 | PMID:16040653
"Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005). |
| 4 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
| 5 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |