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BaseInfo

ncRNA ID	gma-miR169n-5p
Species	Glycine max
Class	miRNA
Genome position	chr15:14150069-14150183 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	7 - CAGCCAAGGGUGAUUUGCCGG - 27
Stem-loop(if miRNA)	C         U                CACU        C    UU    A GGAGUG AGCCAAGGG GAUUUGCCGGCACAGG    AAUUAGUU AAUA  GAAU G |||||| ||||||||| ||||||||||||||||    |||||||| ||||  |||| U CUUUAC UCGGUUCUC UUGAACGGCCGUGUCU    UUAGUUAG UUGU  CUUG U       A         U                UCAU        U    --    A
Stem-loop sequence	GGAGUGCAGCCAAGGGUGAUUUGCCGGCACAGGCACUAAUUAGUUCAAUAUUGAAUAGUUAGUUCUGUUUGAUUGAUUUACUUCUGUGCCGGCAAGUUUCUCUUGGCUACAUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014765430.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:745   CUGGCAAAUCAUCCUUGGCUU   765 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
NM_001253093.2	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:882   CUGGCAAAUCAUCCUUGGCUU   902 Target Full Sequence	2.5	Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
BT096576.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:884   CUGGCAAAUCAUCCUUGGCUU   904 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-15L7 unknown mRNA	NA	coding protein	psRNATarget
AK245196.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:903   CUGGCAAAUCAUCCUUGGCUU   923 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-23-I01	NA	coding protein	psRNATarget
XM_014765431.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:912   CUGGCAAAUCAUCCUUGGCUU   932 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X9, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765426.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:918   CUGGCAAAUCAUCCUUGGCUU   938 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765428.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:978   CUGGCAAAUCAUCCUUGGCUU   998 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769305.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1020   CUGGCAAAUCAUCCUUGGCUU   1040 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_003542302.3	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1039   CUGGCAAAUCAUCCUUGGCUU   1059 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014769304.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1080   CUGGCAAAUCAUCCUUGGCUU   1100 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014769303.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1087   CUGGCAAAUCAUCCUUGGCUU   1107 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014765429.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1056   CUGGCAAAUCAUCCUUGGCUU   1076 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542304.3	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1079   CUGGCAAAUCAUCCUUGGCUU   1099 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_003542303.3	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1135   CUGGCAAAUCAUCCUUGGCUU   1155 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_014765427.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1154   CUGGCAAAUCAUCCUUGGCUU   1174 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3 (LOC100792905), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC100792905)	coding protein	psRNATarget
XM_006600097.2	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |=|||||||||=||||||||* targets:1244   CUGGCAAAUCAUCCUUGGCUU   1264 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-8-like (LOC100777544), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-8-like(LOC100777544)	coding protein	psRNATarget
XM_014761973.1	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |*|||||||||=||||||||* targets:927   CAGGCAAAUCAUCCUUGGCUU   947 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget
XM_003533732.3	ncRNA:21   GGCCGUUUAGUGGGAACCGAC   1   |*|||||||||=||||||||* targets:1047   CAGGCAAAUCAUCCUUGGCUU   1067 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear transcription factor Y subunit A-3-like (LOC100793856), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3-like(LOC100793856)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).