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BaseInfo

ncRNA ID	gma-miR399i
Species	Glycine max
Class	miRNA
Genome position	chr15:6547388-6547476 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	64 - UGCCAAAGGAGAAUUGCCCUG - 84
Stem-loop(if miRNA)	GAAUAA   U                   --U   ----G      U       CAG GCAAUUCUCCUUUGGCAGG   GUU     CAUGUG U       ||| |||||||||||||||||||   |||     ||||||       GUC CGUUAAGAGGAAACCGUCU   CAG     GUACGC C -UUACC   C                   UUC   UAAGA      U
Stem-loop sequence	GAAUAACAGUGCAAUUCUCCUUUGGCAGGUGUUGCAUGUGUUCUCGCAUGAGAAUGACCUUUCUGCCAAAGGAGAAUUGCCCUGCCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT090266.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:512   GGGGGCAAAUCUCCUUUGGCA   532 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-4E15 unknown mRNA	NA	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:710   GGGGGCAAAUCUCCUUUGGCA   730 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:710   GGGGGCAAAUCUCCUUUGGCA   730 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003542700.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:1049   GGGGGCAAAUCUCCUUUGGCA   1069 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006594256.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:1084   GGGGGCAAAUCUCCUUUGGCA   1104 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006597376.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1034   CUGGGCAAAUCUCCUUUGGCA   1054 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597376.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:605   GUGGGCAAAUCUCCUUUGGCA   625 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597376.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:720   UUGGGCAACUCUCCUUUGGCA   740 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:604   GUGGGCAAAUCUCCUUUGGCA   624 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_006597375.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:719   UUGGGCAACUCUCCUUUGGCA   739 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1009   CUGGGCAAAUCUCCUUUGGCA   1029 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:599   GUGGGCAAAUCUCCUUUGGCA   619 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003542998.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:710   UUGGGCAACUCUCCUUUGGCA   730 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:602   GUGGGCAAAUCUCCUUUGGCA   622 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765804.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:713   UUGGGCAACUCUCCUUUGGCA   733 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1033   CUGGGCAAAUCUCCUUUGGCA   1053 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:604   GUGGGCAAAUCUCCUUUGGCA   624 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_003545918.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:719   UUGGGCAACUCUCCUUUGGCA   739 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100784814), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100784814)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1012   CUGGGCAAAUCUCCUUUGGCA   1032 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   **||||||*|||||||||||| targets:602   GUGGGCAAAUCUCCUUUGGCA   622 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_014765805.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:713   UUGGGCAACUCUCCUUUGGCA   733 Target Full Sequence	1.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100805463), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100805463)	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*|||*||*|||||||||||| targets:999   CUGGGAAAAUCUCCUUUGGCA   1019 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003528406.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:908   UUGGGCAUAUCUCCUUUGGCA   928 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*|||*||*|||||||||||| targets:999   CUGGGAAAAUCUCCUUUGGCA   1019 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_014778124.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:908   UUGGGCAUAUCUCCUUUGGCA   928 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100809740), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100809740)	coding protein	psRNATarget
XM_003542700.3	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:1233   UUGGGCAUAUCUCCUUUGGCA   1253 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget
XM_006594256.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:1268   UUGGGCAUAUCUCCUUUGGCA   1288 Target Full Sequence	2.5	PREDICTED: Glycine max probable ubiquitin-conjugating enzyme E2 24 (LOC100306246), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC100306246)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).