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BaseInfo

ncRNA ID	gma-miR4996
Species	Glycine max
Class	miRNA
Genome position	chr15:5418776-5418965 [+]
Reference genome	v1.0
Source	miRBase
Length	20
Mature sequence(if miRNA)	162 - UAGAAGCUCCCCAUGUUCUC - 181
Stem-loop(if miRNA)	UUUCUC     UU            UAA          U      - U  CC CUU U    CA    ---UA       CUUUAAACUUCCUUUUUCA       CUAAC  UGAGAGCAUGGG   CUUCUAUUUU UUGGCG C GU  C   C CCAU  UCUU     CUUCAAC                   A       |||||  ||||||||||||   |||||||||| |||||| | ||  |   | ||||  ||||     |||||||       GAUUG  ACUCUUGUACCC   GAAGAUAAGA GACCGU G CG  G   G GGUA  AGAA     GGAGUUG                   C -----C     CC            CUC          C      A C  UU UUU -    AA    UUAAA       UAUCAGUCCUUAAAAUUAU
Stem-loop sequence	UUUCUCCUAACUUUGAGAGCAUGGGUAACUUCUAUUUUUUUGGCGCUGUCCCCUUCUCCAUCAUCUUUACUUCAACCUUUAAACUUCCUUUUUCAACUAUUAAAAUUCCUGACUAUGUUGAGGAAAUUAAGAAAAUGGGUUUGUUGCCGAUGCCAGCAGAAUAGAAGCUCCCCAUGUUCUCACCGUUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410558.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||||||||||||||*|||| targets:12   GAGAACAUGGGGAGCCUCUA   31 Target Full Sequence	1.5	Sequence 8683 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242688.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||||||||||||||*|||| targets:12   GAGAACAUGGGGAGCCUCUA   31 Target Full Sequence	1.5	Sequence 8683 from Patent EP2985353	NA	coding protein	psRNATarget
JB171019.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||||||||||||||*|||| targets:12   GAGAACAUGGGGAGCCUCUA   31 Target Full Sequence	1.5	Sequence 8683 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001253973.2	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||||||||||||*|||| targets:685   AAGAACAUGGGGAGCCUCUA   704 Target Full Sequence	1.5	Glycine max uncharacterized LOC100784767 (LOC100784767), mRNA	uncharacterized LOC100784767(LOC100784767)	coding protein	psRNATarget
BT093375.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||||||||||||*|||| targets:687   AAGAACAUGGGGAGCCUCUA   706 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-24G19 unknown mRNA	NA	coding protein	psRNATarget
AK245289.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||||||||||||*|||| targets:787   AAGAACAUGGGGAGCCUCUA   806 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-26-D04	NA	coding protein	psRNATarget
EF158427.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||=||||||||||*||||| targets:498   GAGGACAUGGGGAGAUUCUA   517 Target Full Sequence	2.5	Glycine max polyphenol oxidase (PPOJH1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006595313.2	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||=||||||||||*||||| targets:1125   GAGGACAUGGGGAGGUUCUA   1144 Target Full Sequence	2.5	PREDICTED: Glycine max polyphenol oxidase A1, chloroplastic-like (LOC100798184), mRNA	polyphenol oxidase A1, chloroplastic-like(LOC100798184)	coding protein	psRNATarget
XM_003529257.3	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||=||||||||||*||||| targets:1119   GAGGACAUGGGGAGAUUCUA   1138 Target Full Sequence	2.5	PREDICTED: Glycine max polyphenol oxidase A1, chloroplastic (LOC100037473), mRNA	polyphenol oxidase A1, chloroplastic(LOC100037473)	coding protein	psRNATarget
XM_003541500.3	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   |||=||||||||||*||||| targets:1148   GAGGACAUGGGGAGGUUCUA   1167 Target Full Sequence	2.5	PREDICTED: Glycine max polyphenol oxidase A1, chloroplastic-like (LOC100801369), mRNA	polyphenol oxidase A1, chloroplastic-like(LOC100801369)	coding protein	psRNATarget
XM_003523886.3	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||*||||||||||||*| targets:1880   CAGAAGAUGGGGAGCUUCCA   1899 Target Full Sequence	2.5	PREDICTED: Glycine max THO complex subunit 5A-like (LOC100816115), mRNA	THO complex subunit 5A-like(LOC100816115)	coding protein	psRNATarget
XM_014777246.1	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||*||||||||||||*| targets:2708   CAGAAGAUGGGGAGCUUCCA   2727 Target Full Sequence	2.5	PREDICTED: Glycine max THO complex subunit 5A-like (LOC100775509), transcript variant X2, mRNA	THO complex subunit 5A-like(LOC100775509)	coding protein	psRNATarget
XM_003528241.3	ncRNA:20   CUCUUGUACCCCUCGAAGAU   1   *||||*||||||||||||*| targets:2708   CAGAAGAUGGGGAGCUUCCA   2727 Target Full Sequence	2.5	PREDICTED: Glycine max THO complex subunit 5A-like (LOC100775509), transcript variant X1, mRNA	THO complex subunit 5A-like(LOC100775509)	coding protein	psRNATarget

Reference

1	PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean"; Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL; J Exp Bot. 62:2495-2506(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).
3	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).