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BaseInfo

ncRNA ID gma-miR166j-3p
Species Glycine max
Class miRNA
Genome position chr15:3688764-3688931 [-]
Reference genome v1.0
Source miRBase
Length 21
Mature sequence(if miRNA) 7 - UCGGACCAGGCUUCAUUCCCG - 27
Stem-loop(if miRNA)     G         UU      CU     UAACUAUGCAU        UUUU     -             ----AA    U   UU    U
GGUU AUGGGAAUG  GUUUGG  CGAGG           GGUCUUAA    GUUCA UCUUUGAAGCUUU      UUUA GGG  UCGA C
|||| |||||||||  ||||||  |||||           ||||||||    ||||| |||||||||||||      |||| |||  |||| U
CCAA UGCCCUUAC  CGGACC  GCUCU           UCGGAGUU    UAGGU GGAAAUUUCGAAA      AAGU CCC  AGUU C
    A         UU      AG     ----------U        ---U     U             GAAACA    U   -U    U
Stem-loop sequence GGUUGAUGGGAAUGUUGUUUGGCUCGAGGUAACUAUGCAUGGUCUUAAUUUUGUUCAUCUUUGAAGCUUUAAUUUAUGGGUUUCGAUCUCUUUGAUCCCUUGAAACAAAGAAAGCUUUAAAGGUUGGAUUUUGAGGCUUUCUCGGACCAGGCUUCAUUCCCGUAAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779133.1
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:338   CUGGAAUGAAGCCUGGUCCGG   358

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X4, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014779132.1
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:498   CUGGAAUGAAGCCUGGUCCGG   518

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_014777646.1
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:627   CUGGAAUGAAGCCUGGUCCGG   647

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_014777647.1
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:628   CUGGAAUGAAGCCUGGUCCGG   648

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X3, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003530064.2
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:650   CUGGAAUGAAGCCUGGUCCGG   670

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100775524), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100775524) coding protein psRNATarget
XM_003531605.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:788   CUGGAAUGAAGCCUGGUCCGG   808

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_006585513.2
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:791   CUGGAAUGAAGCCUGGUCCGG   811

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100800697), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100800697) coding protein psRNATarget
XM_003530061.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:904   CUGGAAUGAAGCCUGGUCCGG   924

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100819365), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100819365) coding protein psRNATarget
XM_003531604.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||||||||||||||||||=
targets:977   CUGGAAUGAAGCCUGGUCCGG   997

1.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15 (LOC100800165), mRNA homeobox-leucine zipper protein ATHB-15(LOC100800165) coding protein psRNATarget
XM_003526448.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||=|||||||||||||||=
targets:575   CUGGGAUGAAGCCUGGUCCGG   595

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-15-like (LOC100797291), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC100797291) coding protein psRNATarget
XM_003522668.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||=|||||||||||||||=
targets:919   CUGGGAUGAAGCCUGGUCCGG   939

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-8-like (LOC100815727), mRNA homeobox-leucine zipper protein ATHB-8-like(LOC100815727) coding protein psRNATarget
XM_003538102.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||=|||||||||||||||=
targets:1265   CUGGGAUGAAGCCUGGUCCGG   1285

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100804870), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100804870) coding protein psRNATarget
XM_006592195.2
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  |*||=|||||||||||||||=
targets:1291   CUGGGAUGAAGCCUGGUCCGG   1311

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein REVOLUTA-like (LOC100813804), mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC100813804) coding protein psRNATarget
XM_003524945.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  =*||=|||||||||||||||=
targets:590   UUGGGAUGAAGCCUGGUCCGG   610

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100806322), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100806322) coding protein psRNATarget
XM_003546207.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  =*||=|||||||||||||||=
targets:929   UUGGGAUGAAGCCUGGUCCGG   949

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807428), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807428) coding protein psRNATarget
XM_003532740.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  =*||=|||||||||||||||=
targets:1065   UUGGGAUGAAGCCUGGUCCGG   1085

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100807637), mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100807637) coding protein psRNATarget
XM_003535030.3
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  =*||=|||||||||||||||=
targets:1180   UUGGGAUGAAGCCUGGUCCGG   1200

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget
XM_014761858.1
ncRNA:21   GCCCUUACUUCGGACCAGGCU   1
  =*||=|||||||||||||||=
targets:1186   UUGGGAUGAAGCCUGGUCCGG   1206

2.0 PREDICTED: Glycine max homeobox-leucine zipper protein ATHB-14-like (LOC100779499), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-14-like(LOC100779499) coding protein psRNATarget

Reference

1 PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses";
Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R;
BMC Genomics. 12:307(2011).
2 PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs";
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC;
Genes Dev. 25:2540-2553(2011).
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