| ncRNA ID | gma-miR166j-5p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr15:3688764-3688931 [-] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 140 - GGAAUGUUGUUUGGCUCGAGG - 160 |
| Stem-loop(if miRNA) |
G UU CU UAACUAUGCAU UUUU - ----AA U UU U GGUU AUGGGAAUG GUUUGG CGAGG GGUCUUAA GUUCA UCUUUGAAGCUUU UUUA GGG UCGA C |||| ||||||||| |||||| ||||| |||||||| ||||| ||||||||||||| |||| ||| |||| U CCAA UGCCCUUAC CGGACC GCUCU UCGGAGUU UAGGU GGAAAUUUCGAAA AAGU CCC AGUU C A UU AG ----------U ---U U GAAACA U -U U |
| Stem-loop sequence | GGUUGAUGGGAAUGUUGUUUGGCUCGAGGUAACUAUGCAUGGUCUUAAUUUUGUUCAUCUUUGAAGCUUUAAUUUAUGGGUUUCGAUCUCUUUGAUCCCUUGAAACAAAGAAAGCUUUAAAGGUUGGAUUUUGAGGCUUUCUCGGACCAGGCUUCAUUCCCGUAAACC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_006583706.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100790978 (LOC100790978), transcript variant X1, mRNA | uncharacterized LOC100790978(LOC100790978) | coding protein | psRNATarget | |||||||||
| XM_003529209.3 |
|
2.5 | PREDICTED: Glycine max uncharacterized LOC100790978 (LOC100790978), transcript variant X2, mRNA | uncharacterized LOC100790978(LOC100790978) | coding protein | psRNATarget | |||||||||
| XM_006584904.2 |
|
2.5 | PREDICTED: Glycine max transcription factor SAC51-like (LOC100817942), transcript variant X1, mRNA | transcription factor SAC51-like(LOC100817942) | coding protein | psRNATarget | |||||||||
| XM_003523394.3 |
|
3.0 | PREDICTED: Glycine max chlorophyllide a oxygenase, chloroplastic (LOC100806298), mRNA | chlorophyllide a oxygenase, chloroplastic(LOC100806298) | coding protein | psRNATarget | |||||||||
| XM_003526585.3 |
|
3.0 | PREDICTED: Glycine max chlorophyllide a oxygenase, chloroplastic-like (LOC100780485), mRNA | chlorophyllide a oxygenase, chloroplastic-like(LOC100780485) | coding protein | psRNATarget |
| 1 | PMID:21663675
"Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011). |
| 2 | PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011). |