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BaseInfo

ncRNA ID	gma-miR172i-5p
Species	Glycine max
Class	miRNA
Genome position	chr15:2892962-2893122 [-]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	135 - GCAGCAGCAUCAAGAUUCACA - 155
Stem-loop(if miRNA)	A         G           A   CGC    UUUGC        C GGA      -A   UUAAUUAUACAU       U GC GGUGCAGCA CAUCAAGAUUC CAC   CUAA     UAGGACUU A   CUGCAC  CGC            ACAUAUA A || ||||||||| ||||||||||| |||   ||||     |||||||| |   ||||||  |||            ||||||| CG CUACGUCGU GUAGUUCUAAG GUG   GAUU     AUCUUGAA U   GGCGUG  GUG            UGUAUAU C   A         A           G   -UA    ---UU        A -AA      AG   ---UUUCUCGAU       A
Stem-loop sequence	GCAGGUGCAGCAGCAUCAAGAUUCACACCGCCUAAUUUGCUAGGACUUCAGGACUGCACACGCUUAAUUAUACAUACAUAUAUACAUAUAUGUUAGCUCUUUGUGGAGUGCGGAAUAAAGUUCUAUUUUAGAUGUGGGAAUCUUGAUGAUGCUGCAUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK286907.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   **||||||*|||||||||||| targets:511   ACUGAAUCAUGAUGCUGCUGC   531 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-39-P15	NA	coding protein	psRNATarget
XM_006590614.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   **||||||*|||||||||||| targets:614   ACUGAAUCAUGAUGCUGCUGC   634 Target Full Sequence	1.5	PREDICTED: Glycine max NEDD8-conjugating enzyme Ubc12 (LOC100783122), mRNA	NEDD8-conjugating enzyme Ubc12(LOC100783122)	coding protein	psRNATarget
XM_006599370.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   ***|||*|||||||||||||| targets:1419   AAAGAACCUUGAUGCUGCUGC   1439 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase RNF115-like (LOC100790855), mRNA	E3 ubiquitin-protein ligase RNF115-like(LOC100790855)	coding protein	psRNATarget
JA894828.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||*|||||||||||*|||||| targets:118   UGAGAAUCUUGAUGAUGCUGC   138 Target Full Sequence	2.5	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
XM_014774451.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:935   UUUGAAUUAUGAUGCUGCUGC   955 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X4, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_014774450.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:935   UUUGAAUUAUGAUGCUGCUGC   955 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X3, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_006577956.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:934   UUUGAAUUAUGAUGCUGCUGC   954 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X2, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_006577955.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   |*|||||=*|||||||||||| targets:934   UUUGAAUUAUGAUGCUGCUGC   954 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidate phosphatase PAH2-like (LOC100811824), transcript variant X1, mRNA	phosphatidate phosphatase PAH2-like(LOC100811824)	coding protein	psRNATarget
XM_014765083.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2165   UGUUGAUCUUGAUGCUGCUGU   2185 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100782619), transcript variant X2, mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100782619)	coding protein	psRNATarget
XM_003540398.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2674   UGUUGAUCUUGAUGCUGCUGU   2694 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100782619), transcript variant X1, mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100782619)	coding protein	psRNATarget
XM_003543213.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   |||*=|||||||||||||||= targets:2652   UGUUGAUCUUGAUGCUGCUGU   2672 Target Full Sequence	3.0	PREDICTED: Glycine max trafficking protein particle complex II-specific subunit 130 homolog (LOC100787264), mRNA	trafficking protein particle complex II-specific subunit 130 homolog(LOC100787264)	coding protein	psRNATarget
XM_014778684.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:118   GGUGGGUCUUGAUGCUGCUGG   138 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X2, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
NM_001251316.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:139   GGUGGGUCUUGAUGCUGCUGG   159 Target Full Sequence	3.0	Glycine max uncharacterized LOC100305887 (LOC100305887), mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
BT089709.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:139   GGUGGGUCUUGAUGCUGCUGG   159 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-2L23 unknown mRNA	NA	coding protein	psRNATarget
XM_006572737.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:313   GGUGGGUCUUGAUGCUGCUGG   333 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X5, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_006572735.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:348   GGUGGGUCUUGAUGCUGCUGG   368 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X3, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_014779066.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:392   GGUGGGUCUUGAUGCUGCUGG   412 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X4, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
XM_006572736.2	ncRNA:21   ACACUUAGAACUACGACGACG   1   *|||==||||||||||||||* targets:399   GGUGGGUCUUGAUGCUGCUGG   419 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100305887 (LOC100305887), transcript variant X1, mRNA	uncharacterized LOC100305887(LOC100305887)	coding protein	psRNATarget
AK245270.1	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||||||**||||||||||||* targets:613   UGUGAAAGUUGAUGCUGCUGA   633 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-25-K07	NA	coding protein	psRNATarget
XM_003526669.3	ncRNA:21   ACACUUAGAACUACGACGACG   1   ||||||**||||||||||||* targets:793   UGUGAAAGUUGAUGCUGCUGA   813 Target Full Sequence	3.0	PREDICTED: Glycine max CLP protease regulatory subunit CLPX1, mitochondrial (LOC100779768), mRNA	CLP protease regulatory subunit CLPX1, mitochondrial(LOC100779768)	coding protein	psRNATarget

Reference

1	PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).
2	PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"; Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC; Genes Dev. 25:2540-2553(2011).