| ncRNA ID | gma-miR390b-5p |
| Species | Glycine max |
| Class | miRNA |
| Genome position | chr14:47097976-47098078 [+] |
| Reference genome | v1.0 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AAGCUCAGGAGGGAUAGCACC - 31 |
| Stem-loop(if miRNA) |
U A G A U A --UG UG AU AGAA CUGU AAGCUCAGGA GGAUAGC CCG G UAC A AUUAU G |||| |||| |||||||||| ||||||| ||| | ||| | ||||| UCUU GGUA UUCGAGUUCU UCUAUCG GGU C AUG U UGAUA U C C A C U - CAUA GU CU |
| Stem-loop sequence | AGAAUCUGUAAAGCUCAGGAGGGAUAGCACCGUGAUACUGAUGAUUAUAUGUUCAUAGUUGUAUACGUACUUGGCGCUAUCUAUCUUGAGCUUCAUGGCUUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_003518441.3 |
|
2.5 | PREDICTED: Glycine max leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 (LOC100777902), mRNA | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3(LOC100777902) | coding protein | psRNATarget |
| 1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |
| 2 | PMID:20122185
"Prediction of novel miRNAs and associated target genes in Glycine max"; Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G; BMC Bioinformatics. 11 Suppl 1:S14(2010). |
| 3 | PMID:21751852
"Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011). |