ncRNA ID | gma-miR1517 |
Species | Glycine max |
Class | miRNA |
Genome position | chr14:44412355-44412751 [+] |
Reference genome | v1.0 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 364 - AGUCUUGGUCAAUGUCGUUCGAAA - 387 |
Stem-loop(if miRNA) |
      -UA       C       A   -AU                 AU     AA - UUUUACAGUCGACAUCCACUAGAGUUUUUUCGAUCGACAUCGGUCAAAGCAAUUUUUUAGCCAACAUCAAUCAAGGCUAUUUUAUAGCCGAUGUUGGGUAGGGUUUUUUAUUCGACAUCAGUCAGGGCUAUUUUUUAGCCA GCUAGG   UUUUUGA CGACAUU GAC   GACUAUUUUUAGUCGAC  UGACU  G U                                                                                                                                             A ||||||   ||||||| ||||||| |||   |||||||||||||||||  |||||  | | UGAUCC   AAAAGCU GCUGUAA CUG   CUGAUAAAAAUCGGUUG  AGUUG  G U                                                                                                                                             C       CAA       U       -   GUU                 -C     -- A UUUUUAGGAUCGUCCGCAACUGUUUUUUUAGAUAGAUCAUAGCUGAUUUUUUAUCGAACCAGCUACGGCUGGUUAUCUUGGAUGGGCUACAGCUGACUUUUUGUAGUAAUCAGUUACAACCGACUUUUUAGAGAUCAGCUU |
Stem-loop sequence | GCUAGGUAUUUUUGACCGACAUUAGACAUGACUAUUUUUAGUCGACAUUGACUAAGUUUUUACAGUCGACAUCCACUAGAGUUUUUUCGAUCGACAUCGGUCAAAGCAAUUUUUUAGCCAACAUCAAUCAAGGCUAUUUUAUAGCCGAUGUUGGGUAGGGUUUUUUAUUCGACAUCAGUCAGGGCUAUUUUUUAGCCAACUUCGACUAGAGAUUUUUCAGCCAACAUUGACUAAUGAUGUUUUUCAGUCGACAUCGGGUAGGUUCUAUUGGUCGGCAUCGACCAAGCUAUUUUUUAGUCGAUACUAGAUAGAUUUUUUUGUCAACGCCUGCUAGGAUUUUUUAGGUUGACGUUGGCUAAAAAUAGUCUUGGUCAAUGUCGUUCGAAAAAACCCUAGU |
1 | PMID:18402695
"Novel and nodulation-regulated microRNAs in soybean roots"; Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O; BMC Genomics. 9:160(2008). |