| ncRNA ID | ath-miR822-3p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr5:897020-897356 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 48 - UGUGCAAAUGCUUUCUACAGG - 68 |
| Stem-loop(if miRNA) |
---- A UAUA C CG CG A C CC A - A UCGUAC A UUAAUGUCAUAAACUUUA CGACCUUAAGU UAAGUAGA UGGGGAUGUAACG AUGUUGUUUUCUG GGAAGCAUUUGCACAUGUUU UGGAG AUGAAAUCA AUU AUACAUGAAUA UAAUUACCUUU UAGAUAG ACA UGCUUGAAAAAAC UG U ||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||||| ||||||| ||| ||||||||||||| || GCUGGAAUUCA AUUCAUCU ACCCCUACGUUGC UAUAACAAAGGAC CUUUCGUAAACGUGUACAAA ACCUC UAUUUUAGU UAA UAUGUACUUAU AUUAAUGGAAG AUCUAUC UGU ACGAACUUUUUUG GA G UGUU C ---- A AU AU C A AA C U G ------ C AAAAUAUCCACAAAAGUA |
| Stem-loop sequence | CGACCUUAAGUAUAAGUAGAUAUAUGGGGAUGUAACGCAUGUUGUUUUCUGCGGGAAGCAUUUGCACAUGUUUCGUGGAGAAUGAAAUCACAUUCCAUACAUGAAUAAUAAUUACCUUUUAGAUAGAACAUCGUACUGCUUGAAAAAACAUGUUAAUGUCAUAAACUUUAUGAUGAAAACACCUAUAAAAAGCGUUUUUUCAAGCAUGUGCUAUCUAUGAAGGUAAUUACUAUUCAUGUAUAAAAUAUGAUUUUAUCCUCCAUAAAACAUGUGCAAAUGCUUUCUACAGGAAACAAUAUACGUUGCAUCCCCAUCUACUUACACUUAAGGUCGUUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BX833772.1 |
|
3.0 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL76ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |