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BaseInfo

ncRNA ID	gma-miR9728
Species	Glycine max
Class	miRNA
Genome position	chr14:6976566-6976751 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - CGCAGAACUGAAACAAGUUGA - 26
Stem-loop(if miRNA)	CAACCC                        -----       -CUC    U  UUUUUAUGGGUGGUCGAAGCGAACAUAGGUGGAGACCCAAGUUC       GCAGAACUGAAACAAGUUGAGAAA     UGCUCAU    UUUG AG                                            G       ||||||||||||||||||||||||     |||||||    |||| ||       CGUUUUGACUUUGUUCAACUCUUU     ACGGGUA    GGGA GU                                            G ---GUA                        AGGAA       AAAC    -  UUCAAACUCCCAAAACUCGAAGAGGUACCGGAACGUUGAUUUUC
Stem-loop sequence	CAACCCGCAGAACUGAAACAAGUUGAGAAAUGCUCAUCUCUUUGUAGUUUUUAUGGGUGGUCGAAGCGAACAUAGGUGGAGACCCAAGUUCGGCUUUUAGUUGCAAGGCCAUGGAGAAGCUCAAAACCCUCAAACUUUGAGGGCAAAAUGGGCAAAGGAUUUCUCAACUUGUUUCAGUUUUGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006599806.1	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   |=|||*||||||||||||||* targets:420   AGACAUGGAAAAGAAGAAGCU   440 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102660953 (LOC102660953), mRNA	uncharacterized LOC102660953(LOC102660953)	coding protein	psRNATarget
XM_006584153.1	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   |=|||*||||||||||||||* targets:420   AGACAUGGAAAAGAAGAAGCU   440 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102670124 (LOC102670124), mRNA	uncharacterized LOC102670124(LOC102670124)	coding protein	psRNATarget
XM_006603417.1	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   =|||||*||=||||||||||| targets:309   GAACAGAGAGAAGAAGAAGCA   329 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102669934 (LOC102669934), mRNA	uncharacterized LOC102669934(LOC102669934)	coding protein	psRNATarget
XM_006603419.1	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   =|||||*||=||||||||||| targets:309   GAACAGAGAGAAGAAGAAGCA   329 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102670211 (LOC102670211), mRNA	uncharacterized LOC102670211(LOC102670211)	coding protein	psRNATarget
XM_003553930.3	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   ==|*|||||=||||||||||| targets:464   GGAGAGGGAGAAGAAGAAGCA   484 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100816092 (LOC100816092), mRNA	uncharacterized LOC100816092(LOC100816092)	coding protein	psRNATarget
XM_006580042.2	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   |*||||*|=|||||||||||| targets:1728   ACACAGAGGAAAGAAGAAGCA   1748 Target Full Sequence	2.5	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g67720 (LOC100790944), mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g67720(LOC100790944)	coding protein	psRNATarget
FJ014712.1	ncRNA:21   UUUGUCCCUUUUCUUCUUCGU   1   |*||||*|=|||||||||||| targets:1188   ACACAGAGGAAAGAAGAAGCA   1208 Target Full Sequence	2.5	Glycine max clone cw29 leucine-rich repeat family protein / protein kinase family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_006583267.2	ncRNA:21   UU-UGUCCCUUUUCUUCUUCGU   1   ||-|||||*||||||||||||| targets:262   AAUACAGGCAAAAGAAGAAGCA   283 Target Full Sequence	3.0	PREDICTED: Glycine max putative mediator of RNA polymerase II transcription subunit 12 (LOC102663223), mRNA	putative mediator of RNA polymerase II transcription subunit 12(LOC102663223)	coding protein	psRNATarget
XM_006606727.1	ncRNA:21   UUUGUC-CCUUUUCUUCUUCGU   1   |||*||-||||||||||||||| targets:340   AAAGAGAGGAAAAGAAGAAGCA   361 Target Full Sequence	3.0	PREDICTED: Glycine max transcription factor DIVARICATA-like (LOC102659784), mRNA	transcription factor DIVARICATA-like(LOC102659784)	coding protein	psRNATarget

Reference

1	PMID:24475082 "Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons"; Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ; PLoS One. 9:e86153(2014).