Search result

BaseInfo

ncRNA ID	gma-miR5370
Species	Glycine max
Class	miRNA
Genome position	chr14:6763304-6763456 [+]
Reference genome	v1.0
Source	miRBase
Length	21
Mature sequence(if miRNA)	8 - CUAAAGAUUGUCCAAAAGGAA - 28
Stem-loop(if miRNA)	--ACAAAUUACA  GGAUAAGAAAAAUCAC GUUUGCACUAAAGAUUGUCCAAAAGGAAUAUUGUUUUAUGCAGAAG            UC                A ||||||||||||||||||||||||||||||||||||||||||||||            ||                C CAAACGUGAUUUCUAACAGGUUUUCCUUAUAACAAAAUACGUCUUU            CG                C                                               AUCUCUAGAUUU  UUACGUCGUUAAUACA
Stem-loop sequence	GUUUGCACUAAAGAUUGUCCAAAAGGAAUAUUGUUUUAUGCAGAAGACAAAUUACAUCGGAUAAGAAAAAUCACACCACAUAAUUGCUGCAUUGCUUUAGAUCUCUAUUUCUGCAUAAAACAAUAUUCCUUUUGGACAAUCUUUAGUGCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006595890.2	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||||||||||||||||||||| targets:2503   UUCCUUUUGGACAAUCUUUAG   2523 Target Full Sequence	0.0	PREDICTED: Glycine max protein OSB1, mitochondrial-like (LOC100818465), transcript variant X5, mRNA	protein OSB1, mitochondrial-like(LOC100818465)	coding protein	psRNATarget
XM_006595890.2	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||||||||||||||||||||| targets:5628   UUCCUUUUGGACAAUCUUUAG   5648 Target Full Sequence	0.0	PREDICTED: Glycine max protein OSB1, mitochondrial-like (LOC100818465), transcript variant X5, mRNA	protein OSB1, mitochondrial-like(LOC100818465)	coding protein	psRNATarget
XM_006595889.2	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||||||||||||||||||||| targets:2517   UUCCUUUUGGACAAUCUUUAG   2537 Target Full Sequence	0.0	PREDICTED: Glycine max protein OSB1, mitochondrial-like (LOC100818465), transcript variant X4, mRNA	protein OSB1, mitochondrial-like(LOC100818465)	coding protein	psRNATarget
XM_006595889.2	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||||||||||||||||||||| targets:5642   UUCCUUUUGGACAAUCUUUAG   5662 Target Full Sequence	0.0	PREDICTED: Glycine max protein OSB1, mitochondrial-like (LOC100818465), transcript variant X4, mRNA	protein OSB1, mitochondrial-like(LOC100818465)	coding protein	psRNATarget
XM_014764574.1	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||||||||||||*|||||||* targets:71   UUCCUUUUGGACCAUCUUUAC   91 Target Full Sequence	2.5	PREDICTED: Glycine max putative cyclic nucleotide-gated ion channel 15 (LOC100791992), transcript variant X2, mRNA	putative cyclic nucleotide-gated ion channel 15(LOC100791992)	coding protein	psRNATarget
XM_014767212.1	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||*||||||||||||||||*| targets:1108   UUACUUUUGGACAAUCUUUUG   1128 Target Full Sequence	2.5	PREDICTED: Glycine max chlorophyllide a oxygenase, chloroplastic (LOC100820586), transcript variant X2, mRNA	chlorophyllide a oxygenase, chloroplastic(LOC100820586)	coding protein	psRNATarget
XM_003544643.3	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||*||||||||||||||||*| targets:1125   UUACUUUUGGACAAUCUUUUG   1145 Target Full Sequence	2.5	PREDICTED: Glycine max chlorophyllide a oxygenase, chloroplastic (LOC100820586), transcript variant X1, mRNA	chlorophyllide a oxygenase, chloroplastic(LOC100820586)	coding protein	psRNATarget
XM_003542999.3	ncRNA:21   AAGGAAAACCUGUUAGAAAUC   1   ||*||||||||||||||||*| targets:1126   UUACUUUUGGACAAUCUUUUG   1146 Target Full Sequence	2.5	PREDICTED: Glycine max chlorophyllide a oxygenase, chloroplastic (LOC100805998), mRNA	chlorophyllide a oxygenase, chloroplastic(LOC100805998)	coding protein	psRNATarget

Reference

1

PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses"; Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R; BMC Genomics. 12:307(2011).