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BaseInfo

ncRNA ID	ath-miR822-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr5:897020-897356 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	268 - UGCGGGAAGCAUUUGCACAUG - 288
Stem-loop(if miRNA)	----           A        UAUA             C             CG                    CG     A         C   CC           A           -       A   UCGUAC             A  UUAAUGUCAUAAACUUUA     CGACCUUAAGU UAAGUAGA    UGGGGAUGUAACG AUGUUGUUUUCUG  GGAAGCAUUUGCACAUGUUU  UGGAG AUGAAAUCA AUU  AUACAUGAAUA UAAUUACCUUU UAGAUAG ACA      UGCUUGAAAAAAC UG                  U     ||||||||||| ||||||||    ||||||||||||| |||||||||||||  ||||||||||||||||||||  ||||| ||||||||| |||  ||||||||||| ||||||||||| ||||||| |||      ||||||||||||| ||     GCUGGAAUUCA AUUCAUCU    ACCCCUACGUUGC UAUAACAAAGGAC  CUUUCGUAAACGUGUACAAA  ACCUC UAUUUUAGU UAA  UAUGUACUUAU AUUAAUGGAAG AUCUAUC UGU      ACGAACUUUUUUG GA                  G UGUU           C        ----             A             AU                    AU     C         A   AA           C           U       G   ------             C  AAAAUAUCCACAAAAGUA
Stem-loop sequence	CGACCUUAAGUAUAAGUAGAUAUAUGGGGAUGUAACGCAUGUUGUUUUCUGCGGGAAGCAUUUGCACAUGUUUCGUGGAGAAUGAAAUCACAUUCCAUACAUGAAUAAUAAUUACCUUUUAGAUAGAACAUCGUACUGCUUGAAAAAACAUGUUAAUGUCAUAAACUUUAUGAUGAAAACACCUAUAAAAAGCGUUUUUUCAAGCAUGUGCUAUCUAUGAAGGUAAUUACUAUUCAUGUAUAAAAUAUGAUUUUAUCCUCCAUAAAACAUGUGCAAAUGCUUUCUACAGGAAACAAUAUACGUUGCAUCCCCAUCUACUUACACUUAAGGUCGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_120311.2	ncRNA:21   GUACACGUUUACGAAGGGCGU   1   ||||||||||||||||=|||| targets:1256   CAUGUGCAAAUGCUUCUCGCA   1276 Target Full Sequence	1.5	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein partial mRNA	Cysteine/Histidine-rich C1 domain family protein(AT5G02330)	coding protein	psRNATarget
NM_126963.3	ncRNA:21   GUACACGUUUACGAAGGGCGU   1   ||||||||||||||||=|||| targets:1325   CAUGUGCAAAUGCUUCUCGCA   1345 Target Full Sequence	1.5	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT2G13900)	coding protein	psRNATarget
NM_120313.2	ncRNA:21   GUACACGUUUACGAAGGGCGU   1   ||||||||||||||||=|||| targets:1362   CAUGUGCAAAUGCUUCUCGCA   1382 Target Full Sequence	1.5	Arabidopsis thaliana Cysteine/Histidine-rich C1 domain family protein mRNA	Cysteine/Histidine-rich C1 domain family protein(AT5G02350)	coding protein	psRNATarget
AY247816.1	ncRNA:21   GUACACGUUUACGAAGGGCGU   1   ||||||||||||||||=|||| targets:1320   CAUGUGCAAAUGCUUCUCGCA   1340 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13900/F17L24.4) mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).