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BaseInfo

ncRNA ID	gma-miR172d
Species	Glycine max
Class	miRNA
Genome position	chr14:5548752-5548901 [+]
Reference genome	v1.0
Source	miRBase
Length	24
Mature sequence(if miRNA)	111 - GGAAUCUUGAUGAUGCUGCAGCAG - 134
Stem-loop(if miRNA)	AAAAC     CUG     AGA  G                A  AGCU    -      --  UG      - UG  C      AGUCG   AUUGC   UG AGCAUCAUCAAGAUUC CA    UCAG GGGUUU  UU  UUUGGG G  GU C      |||||   |||||   || |||||||||||||||| ||    |||| ||||||  ||  |||||| |  || C      UCAGC   UAACG   AC UCGUAGUAGUUCUAAG GU    AGUU CCCGAA  AA  AAACCC C  UA U -ACAA     AAA     ACG  G                G  --AU    U      UU  GU      U GU  U
Stem-loop sequence	AAAACAGUCGCUGAUUGCAGAUGGAGCAUCAUCAAGAUUCACAAGCUUCAGGGGUUUUUUGUUUGGGGUGGUCCCUUAUUGCUCCCAAAUGAAUUAAGCCCUUUGAUAUGGGAAUCUUGAUGAUGCUGCAGCAGCAAUAAACGACUAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006573580.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||| targets:1811   CUGCUGCAGCAUCAUCAGGAUUCC   1834 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_014763839.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||| targets:1817   CUGCUGCAGCAUCAUCAGGAUUCC   1840 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100786333), mRNA	floral homeotic protein APETALA 2-like(LOC100786333)	coding protein	psRNATarget
XM_003517264.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||| targets:1819   CUGCUGCAGCAUCAUCAGGAUUCC   1842 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_006573579.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||| targets:1826   CUGCUGCAGCAUCAUCAGGAUUCC   1849 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100801975), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100801975)	coding protein	psRNATarget
XM_003550003.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1966   CUGCUGCAGCAUCAUCAAGUUUCC   1989 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006600875.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1969   CUGCUGCAGCAUCAUCAAGUUUCC   1992 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100792442), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100792442)	coding protein	psRNATarget
XM_006579822.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1968   CUGCUGCAGCAUCAUCAAGUUUCC   1991 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003524595.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1972   CUGCUGCAGCAUCAUCAAGUUUCC   1995 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775567.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1987   CUGCUGCAGCAUCAUCAAGUUUCC   2010 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_014775566.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||||*|||| targets:1991   CUGCUGCAGCAUCAUCAAGUUUCC   2014 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100794096), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100794096)	coding protein	psRNATarget
XM_003520593.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||| targets:1542   CUACUGCAGCAUCAUCAGGAUUCC   1565 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100808212), mRNA	floral homeotic protein APETALA 2-like(LOC100808212)	coding protein	psRNATarget
XM_014772192.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||| targets:2028   CUACUGCAGCAUCAUCAGGAUUCC   2051 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
XM_003554309.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||| targets:2047   CUACUGCAGCAUCAUCAGGAUUCC   2070 Target Full Sequence	1.5	PREDICTED: Glycine max floral homeotic protein APETALA 2-like (LOC100797238), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC100797238)	coding protein	psRNATarget
JA894828.1	ncRNA:24   GACG---ACGUCGUAGUAGUUCUAAGG   1   =|||---||=||||||||||||||||* targets:15   UUGCGGAUGUAGCAUCAUCAAGAUUCA   41 Target Full Sequence	2.0	Sequence 145 from Patent WO2011067745	NA	coding protein	psRNATarget
KT031086.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||= targets:1307   CUGCUGCAGCAUCAUCAGGAUUCU   1330 Target Full Sequence	2.5	Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_003540705.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||= targets:1761   CUGCUGCAGCAUCAUCAGGAUUCU   1784 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592181.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||= targets:1765   CUGCUGCAGCAUCAUCAGGAUUCU   1788 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592180.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||= targets:1807   CUGCUGCAGCAUCAUCAGGAUUCU   1830 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006592179.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |||||||||||||||||=|||||= targets:1810   CUGCUGCAGCAUCAUCAGGAUUCU   1833 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100788303), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100788303)	coding protein	psRNATarget
XM_006597244.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||= targets:1746   CUACUGCAGCAUCAUCAGGAUUCU   1769 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_003546994.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||= targets:1795   CUACUGCAGCAUCAUCAGGAUUCU   1818 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7 (LOC100796271), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC100796271)	coding protein	psRNATarget
XM_006594938.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||= targets:1852   CUACUGCAGCAUCAUCAGGAUUCU   1875 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003541960.2	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||= targets:1898   CUACUGCAGCAUCAUCAGGAUUCU   1921 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_006594937.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*||||||||||||||=|||||= targets:2013   CUACUGCAGCAUCAUCAGGAUUCU   2036 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor RAP2-7-like (LOC100777102), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC100777102)	coding protein	psRNATarget
XM_003535131.3	ncRNA:24   GACG-------ACGUCGUAGUAGUUCUAAGG   1   =|||-------|||||||||||||=|||||* targets:1633   UUGCAACCAAAUGCAGCAUCAUCAGGAUUCG   1663 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100783626), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100783626)	coding protein	psRNATarget
KT031071.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1175   CAAAUGCAGCAUCAUCAGGAUUCG   1198 Target Full Sequence	2.5	Glycine max clone HN_CCL_188 AP2-EREBP transcription factor (Glyma02g09600.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014765905.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1395   CAAAUGCAGCAUCAUCAGGAUUCG   1418 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X5, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765903.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1472   CAAAUGCAGCAUCAUCAGGAUUCG   1495 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X4, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765900.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1532   CAAAUGCAGCAUCAUCAGGAUUCG   1555 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014765901.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1587   CAAAUGCAGCAUCAUCAGGAUUCG   1610 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_003519962.3	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   |***|||||||||||||=|||||* targets:1647   CAAAUGCAGCAUCAUCAGGAUUCG   1670 Target Full Sequence	2.5	PREDICTED: Glycine max AP2-like ethylene-responsive transcription factor TOE3 (LOC100776138), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC100776138)	coding protein	psRNATarget
XM_014776734.1	ncRNA:24   GACGACGUCGUAGUAGUUCUAAGG   1   ||*=||=|*|*||||||||||||| targets:1965   CUUUUGUACCUUCAUCAAGAUUCC   1988 Target Full Sequence	3.0	PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (LOC100807748), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290(LOC100807748)	coding protein	psRNATarget

Reference

1	PMID:19084500 "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"; Wang Y, Li P, Cao X, Wang X, Zhang A, Li X; Biochem Biophys Res Commun. 378:799-803(2009).
2	PMID:21751852 "Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome"; Radwan O, Liu Y, Clough SJ; Mol Plant Microbe Interact. 24:958-972(2011).